RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FGD3Q5JSP0 725 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 NOXRED1Q6NXP6 359 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 DET1Q7L5Y6 550 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 ANKRD46Q86W74 232 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 HS6ST3Q8IZP7 471 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 RAB2BQ8WUD1 216 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 PYCR2Q96C36 320 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 APIPQ96GX9 242 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 P2RY13Q9BPV8 354 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 TMPRSS11EQ9UL52 423 aa20.65■□□□□ 0.9
VPS28-205ENST00000526204 SLC16A6O15403 523 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 MYCLP1P12525 358 aaPredicted RBP20.64■□□□□ 0.89
VPS28-205ENST00000526204 MATN1P21941 496 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 SRSF11Q05519 484 aaKnown RBP20.64■□□□□ 0.89
VPS28-205ENST00000526204 MTAPQ13126 283 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 DEFB115Q30KQ5 88 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 LIPJQ5W064 366 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 CES5AQ6NT32 575 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 KLHL35Q6PF15 583 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 CYP2U1Q7Z449 544 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 VRK3Q8IV63 474 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 SPARTQ8N0X7 666 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 NELL1Q92832 810 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 FCRL1Q96LA6 429 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 APOLD1Q96LR9 279 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 BEGAINQ9BUH8 593 aa20.64■□□□□ 0.89
VPS28-205ENST00000526204 NAA50Q9GZZ1 169 aaKnown RBP20.64■□□□□ 0.89
VPS28-205ENST00000526204 SH3PXD2BA1X283 911 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 PFDN1O60925 122 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 DNAJB5O75953 348 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 ZNF30P17039 623 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 MAP4P27816 1152 aaKnown RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 RYKP34925 604 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 HALP42357 657 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 CSTF3Q12996 717 aaKnown RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 DOK6Q6PKX4 331 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 DCP2Q8IU60 420 aaKnown RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 C10orf111Q8N326 155 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 FNDC8Q8TC99 324 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 THG1LQ9NWX6 298 aaKnown RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 TGM5O43548 720 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 LILRB3O75022 631 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 AP2A2O94973 939 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 IL7RP16871 459 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 CDKN2CP42773 168 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 CD47Q08722 323 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 NFATC3Q12968 1075 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 CHIT1Q13231 466 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 C16orf72Q14CZ0 275 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 MEP1AQ16819 746 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 DUOXA1Q1HG43 343 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 ZNF691Q5VV52 312 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 SHQ1Q6PI26 577 aaKnown RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 TMEM179BQ7Z7N9 219 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 ZDHHC21Q8IVQ6 265 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 PGBD3Q8N328 593 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 ASZ1Q8WWH4 475 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 SNX19Q92543 992 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 FBXL8Q96CD0 374 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 GPN2Q9H9Y4 310 aaPredicted RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 RC3H2Q9HBD1 1191 aaKnown RBP20.63■□□□□ 0.89
VPS28-205ENST00000526204 GPRC5BQ9NZH0 403 aa20.63■□□□□ 0.89
VPS28-205ENST00000526204 A0A1W2PRU2 124 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 ARHGDIAP52565 204 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 ISL1P61371 349 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 BRAT1Q6PJG6 821 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 GDPD4Q6W3E5 623 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 TBC1D15Q8TC07 691 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 EGLN2Q96KS0 407 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 CCDC138Q96M89 665 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 LHPPQ9H008 270 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 AASDHPPTQ9NRN7 309 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 MBD1Q9UIS9 605 aaPredicted RBP20.62■□□□□ 0.89
VPS28-205ENST00000526204 PIKFYVEQ9Y2I7 2098 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 LRATO95237 230 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 FTH1P02794 183 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 ITGAMP11215 1152 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 PRKACGP22612 351 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 PPM1AP35813 382 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 SPIDRQ14159 915 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 ZNF829Q3KNS6 432 aaPredicted RBP20.62■□□□□ 0.89
VPS28-205ENST00000526204 CPZQ66K79 652 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 GTF2IRD2BQ6EKJ0 949 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 OR4F3Q6IEY1 312 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 ERICH5Q6P6B1 374 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 SLC39A5Q6ZMH5 540 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 CCDC149Q6ZUS6 474 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 GTF2IRD2Q86UP8 949 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 SYT12Q8IV01 421 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 BORCS5Q969J3 196 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 TOX2Q96NM4 488 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 SLC46A2Q9BY10 475 aa20.62■□□□□ 0.89
VPS28-205ENST00000526204 TMEFF2Q9UIK5 374 aaPredicted RBP20.62■□□□□ 0.89
VPS28-205ENST00000526204 OBSL1O75147 1896 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 ABHD14A-ACY1A0A1B0GW23 586 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 WASH3PC4AMC7 463 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 PRAMEF4O60810 478 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 CCDC159P0C7I6 412 aa20.61■□□□□ 0.89
VPS28-205ENST00000526204 CYP2A6P11509 494 aaPredicted RBP20.61■□□□□ 0.89
VPS28-205ENST00000526204 ITPKAP23677 461 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms