RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RBBP8Q99708 897 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 SLC30A3Q99726 388 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 RAB11FIP5Q9BXF6 653 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 FUT8Q9BYC5 575 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 TWSG1Q9GZX9 223 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 SRMSQ9H3Y6 488 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 TFB2MQ9H5Q4 396 aaKnown RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 ACSS3Q9H6R3 686 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 LHX9Q9NQ69 397 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 GALPQ9UBC7 116 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 NOL12Q9UGY1 213 aaKnown RBP eCLIP9.8□□□□□ -0.84
VPS28-204ENST00000526054 TSR3Q9UJK0 312 aaKnown RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 RARRES3Q9UL19 164 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 PADI1Q9ULC6 663 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 MAN2B2Q9Y2E5 1009 aa9.8□□□□□ -0.84
VPS28-204ENST00000526054 V9GYY5 206 aaPredicted RBP9.8□□□□□ -0.84
VPS28-204ENST00000526054 ANKRD12Q6UB98 2062 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 A0A087WUV0 522 aaPredicted RBP9.79□□□□□ -0.84
VPS28-204ENST00000526054 IGHV5-51A0A0C4DH38 117 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 PIPSLA2A3N6 862 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 TLCD2A6NGC4 264 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 C21orf140B9A014 251 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 PIAS1O75925 651 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 MATN4O95460 622 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 C1QAP02745 245 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 TUBBP07437 444 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ABHD2P08910 425 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 FURINP09958 794 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 SAT1P21673 171 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 BDKRB1P46663 353 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ARL4DP49703 201 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 PMS2P54278 862 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 CDKN2DP55273 166 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 IL2P60568 153 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 POU4F1Q01851 419 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ACY1Q03154 408 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 KCNAB1Q14722 419 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 EFTUD2Q15029 972 aaKnown RBP eCLIP9.79□□□□□ -0.842e-7■■■■□ 23.3
VPS28-204ENST00000526054 PWWP2BQ6NUJ5 590 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 TCTN3Q6NUS6 607 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 PAQR3Q6TCH7 311 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ASB18Q6ZVZ8 466 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 TAOK1Q7L7X3 1001 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 AMIGO1Q86WK6 493 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 GSPT2Q8IYD1 628 aaKnown RBP9.79□□□□□ -0.84
VPS28-204ENST00000526054 MYO1HQ8N1T3 1032 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 TEX19Q8NA77 164 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 OR4E2Q8NGC2 313 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 RAD51AP1Q96B01 352 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 LINGO1Q96FE5 620 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 SLC41A2Q96JW4 573 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 CD180Q99467 661 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 GPR22Q99680 433 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 OLFM1Q99784 485 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 MCMBPQ9BTE3 642 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ACTL8Q9H568 366 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ANKZF1Q9H8Y5 726 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 POPDC3Q9HBV1 291 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 SYTL2Q9HCH5 934 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 HRASLS2Q9NWW9 162 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 ICKQ9UPZ9 632 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 PLAAQ9Y263 795 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 PCDHGA6Q9Y5G7 932 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 NFS1Q9Y697 457 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 IKBKGQ9Y6K9 419 aa9.79□□□□□ -0.84
VPS28-204ENST00000526054 GSAPA4D1B5 854 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 OR6C74A6NCV1 312 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 PABPN1LA6NDY0 278 aaKnown RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 K7EM74 188 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 PSIP1O75475 530 aaKnown RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 C1orf105O95561 183 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 C8GP07360 202 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 INHBAP08476 426 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 EBLN1P0CF75 366 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 FOLR1P15328 257 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 ZNF37AP17032 561 aaPredicted RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 PKLRP30613 574 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 RAB28P51157 221 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 TAS2R39P59534 338 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 TIAL1Q01085 375 aaKnown RBP eCLIP9.78□□□□□ -0.84
VPS28-204ENST00000526054 SP140Q13342 867 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 USP10Q14694 798 aaKnown RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 UAP1Q16222 522 aaPredicted RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 PIWIL4Q7Z3Z4 852 aaKnown RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 ATCAYQ86WG3 371 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 KMT5CQ86Y97 462 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 NKAPQ8N5F7 415 aaKnown RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 MIB2Q96AX9 1013 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 FCRL4Q96PJ5 515 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 MAP3K3Q99759 626 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 XKR8Q9H6D3 395 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 FGF21Q9NSA1 209 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 OR6C2Q9NZP2 312 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 SPATA7Q9P0W8 599 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 SEMA5BQ9P283 1151 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 TLK1Q9UKI8 766 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 SLC39A10Q9ULF5 831 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 PLAGL1Q9UM63 463 aa9.78□□□□□ -0.84
VPS28-204ENST00000526054 RUVBL2Q9Y230 463 aaKnown RBP9.78□□□□□ -0.84
VPS28-204ENST00000526054 TNRC6AQ8NDV7 1962 aaKnown RBP9.77□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms