RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 SMURF2Q9HAU4 748 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 RSL24D1Q9UHA3 163 aaKnown RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 MAP4K5Q9Y4K4 846 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 CENPFP49454 3210 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3DA0A087WVF3 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3IA0A087WXS9 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3EA0A087X179 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3KA0A087X1G2 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3FA6NER0 549 aaPredicted RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3LB9A6J9 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TSPAN12O95859 305 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 SLC16A8O95907 504 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3HP0C7X1 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 IRS1P35568 1242 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 CAPGP40121 348 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 IDH2P48735 452 aaKnown RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 CTSCP53634 463 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 ADARP55265 1226 aaKnown RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 DOC2AQ14183 400 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3GQ6DHY5 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 OR52E8Q6IFG1 317 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3CQ6IPX1 549 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 GALNT10Q86SR1 603 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 VRK3Q8IV63 474 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D3Q8IZP1 549 aaPredicted RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 LEMD2Q8NC56 503 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 PDPRQ8NCN5 879 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 PDLIM5Q96HC4 596 aaKnown RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 CEP44Q9C0F1 390 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 RPF2Q9H7B2 306 aaKnown RBP9.88□□□□□ -0.83
MCF2-209ENST00000520602 AASDHPPTQ9NRN7 309 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 HS3ST2Q9Y278 367 aa9.88□□□□□ -0.83
MCF2-209ENST00000520602 LSM1O15116 133 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 SLC31A1O15431 190 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 PCDH7O60245 1069 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 ZBTB11O95625 1053 aaPredicted RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 RPN2P04844 631 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 C1SP09871 688 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 PSMB9P28065 219 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 RPS13P62277 151 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 ZSWIM9Q86XI8 627 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 TMEM126BQ8IUX1 230 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 KIAA2013Q8IYS2 634 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 DTWD1Q8N5C7 304 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 TBC1D19Q8N5T2 526 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 OR52J3Q8NH60 311 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 OR14C36Q8NHC7 312 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 WFIKKN2Q8TEU8 576 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 BTN2A2Q8WVV5 523 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 MAGEB10Q96LZ2 347 aaPredicted RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 SLC12A9Q9BXP2 914 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 ROGDIQ9GZN7 287 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 RAB23Q9ULC3 237 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 MAFFQ9ULX9 164 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 SAMD4AQ9UPU9 718 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 DLGAP4Q9Y2H0 992 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 MED16Q9Y2X0 877 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 SH3GLB1Q9Y371 365 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 GRXCR1A8MXD5 290 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 M0R3G1 203 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 TAPBPO15533 448 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 SUV39H1O43463 412 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 CREG1O75629 220 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 C8BP07358 591 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 BMP1P13497 986 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 NR4A1P22736 598 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 FSHRP23945 695 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 SRSF11Q05519 484 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 TP53BP2Q13625 1128 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 COL9A2Q14055 689 aaPredicted RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 SELPLGQ14242 412 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 INTS11Q5TA45 600 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 LCN8Q6JVE9 175 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 PDE12Q6L8Q7 609 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 RRM2BQ7LG56 351 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 AMZ2Q86W34 360 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 TRAM1L1Q8N609 369 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 OR4K1Q8NGD4 311 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 TADA1Q96BN2 335 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 LIN28AQ9H9Z2 209 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 RASSF1Q9NS23 344 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 EXD2Q9NVH0 621 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 UBAP1Q9NZ09 502 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 DGKBQ9Y6T7 804 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 NUP214P35658 2090 aaPredicted RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 TCRBV3S1A0A5B6 114 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 C7orf72A4D263 438 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 DENRO43583 198 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 FZD6O60353 706 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 ERAL1O75616 437 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 TIMP2P16035 220 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 HTR1EP28566 365 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 IL12AP29459 219 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 ASMTP46597 345 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 TIAL1Q01085 375 aaKnown RBP eCLIP9.87□□□□□ -0.83
MCF2-209ENST00000520602 USP39Q53GS9 565 aaKnown RBP9.87□□□□□ -0.83
MCF2-209ENST00000520602 TCEAL5Q5H9L2 206 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 CCNYL2Q5T2Q4 361 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 CES5AQ6NT32 575 aa9.87□□□□□ -0.83
MCF2-209ENST00000520602 ARL10Q8N8L6 244 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms