RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 NENFQ9UMX5 172 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 BRWD1Q9NSI6 2320 aa12.38□□□□□ -0.43
USP53-209ENST00000514665 WNT9AO14904 365 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 NFATC1O95644 943 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 STATHP02808 62 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 ANXA8P13928 327 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 ZNF12P17014 697 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 CD247P20963 164 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 IL4RP24394 825 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 DNAJB1P25685 340 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 RHAGQ02094 409 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 FAM129CQ86XR2 697 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 RAB43Q86YS6 212 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 CADM2Q8N3J6 435 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 PSKH2Q96QS6 385 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 SLC35A5Q9BS91 424 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 TPT1P8Q9HAU6 139 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 LOC100130705A0A1B0GUX0 176 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 FOXD2O60548 495 aaPredicted RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 ATP6V1G1O75348 118 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 DHRS4L1P0CG22 281 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 PRSS56P0CW18 603 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 CD1DP15813 335 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 DNAJA1P31689 397 aaKnown RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 C1QTNF8P60827 252 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 FOXM1Q08050 763 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 PCBP2Q15366 365 aaKnown RBP eCLIP12.37□□□□□ -0.43
USP53-209ENST00000514665 CRTC2Q53ET0 693 aaPredicted RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 FAM220AQ7Z4H9 259 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 SRFBP1Q8NEF9 429 aaKnown RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 RELTQ969Z4 430 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 GFM1Q96RP9 751 aaKnown RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 GPR62Q9BZJ7 368 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 OR51B5Q9H339 312 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 ZSCAN32Q9NX65 697 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 TRPS1Q9UHF7 1281 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 IQCMA0A1B0GVH7 501 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 PRORSD1PA6NEY8 169 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 FAM47E-STBD1D6RA91 191 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 KLK1P06870 262 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 NUP62P37198 522 aaPredicted RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 STAT5AP42229 794 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 ALDH3A2P51648 485 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 AP1S2P56377 157 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 ABHD18Q0P651 414 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 SCARB2Q14108 478 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.37□□□□□ -0.43
USP53-209ENST00000514665 TPRG1Q6ZUI0 275 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 AMZ2Q86W34 360 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 GALNT13Q8IUC8 556 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.37□□□□□ -0.43
USP53-209ENST00000514665 SCAMP4Q969E2 229 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 TMEM203Q969S6 136 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 RTP4Q96DX8 246 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 LRCH3Q96II8 777 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 SMG9Q9H0W8 520 aaKnown RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 OR51V1Q9H2C8 321 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 TRIT1Q9H3H1 467 aaKnown RBP12.37□□□□□ -0.43
USP53-209ENST00000514665 Q9Y3F1 56 aa12.37□□□□□ -0.43
USP53-209ENST00000514665 SAGE2PA6NJ88 616 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 UPK3BL1B0FP48 263 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 UPK3BL2E5RIL1 263 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 KDELR3O43731 214 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 GPR32O75388 356 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 RPLP0P05388 317 aaKnown RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 PREPP48147 710 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 KCNAB2Q13303 367 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 CCDC88AQ3V6T2 1871 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 SYVN1Q86TM6 617 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 OR52B6Q8NGF0 335 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 ZNF461Q8TAF7 563 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 LCN9Q8WX39 176 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 LMLNQ96KR4 655 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 C12orf66Q96MD2 445 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 IL12RB2Q99665 862 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 DCSTAMPQ9H295 470 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 ADAP2Q9NPF8 381 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 DNAJC15Q9Y5T4 150 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 XPNPEP2O43895 674 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 CD68P34810 354 aaPredicted RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 LARS2Q15031 903 aaKnown RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 GPRC6AQ5T6X5 926 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 TPGS2Q68CL5 300 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 PSAPL1Q6NUJ1 521 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 AGTRAPQ6RW13 159 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 RTL4Q6ZR62 310 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 KDM1BQ8NB78 822 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 OR4K1Q8NGD4 311 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 TRMT61BQ9BVS5 477 aaKnown RBP12.36□□□□□ -0.43
USP53-209ENST00000514665 B4GALT6Q9UBX8 382 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 IKZF2Q9UKS7 526 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 PEX16Q9Y5Y5 336 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 STX16O14662 325 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 PDPK1O15530 556 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 C8BP07358 591 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 ELK4P28324 431 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 BDKRB1P46663 353 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 MS4A2Q01362 244 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 PIGFQ07326 219 aa12.36□□□□□ -0.43
USP53-209ENST00000514665 C5orf22Q49AR2 442 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms