RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 PHC2Q8IXK0 858 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SLC15A3Q8IY34 581 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CMTM8Q8IZV2 173 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ARPC5LQ9BPX5 153 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 GINS4Q9BRT9 223 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 PAK1IP1Q9NWT1 392 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 INSL6Q9Y581 213 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 PLCH1Q4KWH8 1693 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 IGKV6-21A0A0C4DH24 114 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 OR10H2O60403 315 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 ESR1P03372 595 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 PRKACAP17612 351 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 HOXA11P31270 313 aaPredicted RBP12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CTSKP43235 329 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 BTBD16Q32M84 506 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 GARNL3Q5VVW2 1013 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 LYSMD3Q7Z3D4 306 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CEP295NLQ96MC4 621 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 COPS4Q9BT78 406 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 EBPLQ9BY08 206 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 DSN1Q9H410 356 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 VRTNQ9H8Y1 702 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 SIAEQ9HAT2 523 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 CFL2Q9Y281 166 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 NWD2Q9ULI1 1742 aa12.85□□□□□ -0.35
TCOF1-213ENST00000514442 OGNP20774 298 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ENDOUP21128 410 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PLA2G16P53816 162 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 RGS1Q08116 209 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PAFAH1B3Q15102 231 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 C6orf141Q5SZD1 244 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 C15orf39Q6ZRI6 1047 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 SIGLEC10Q96LC7 697 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 RDH12Q96NR8 316 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 GPR62Q9BZJ7 368 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 GPN2Q9H9Y4 310 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 WDR6Q9NNW5 1121 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ARMC1Q9NVT9 282 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 OSER1Q9NX31 292 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 MRPL39Q9NYK5 338 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ANGPT4Q9Y264 503 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ELOVL7A1L3X0 281 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 GABRDO14764 452 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 UPK1BO75841 260 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 SCELO95171 688 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 RASGRP1O95267 797 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 FAM163BP0C2L3 166 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 GSK3BP49841 420 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 CARD16Q5EG05 197 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ARSIQ5FYB1 569 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 CPTPQ5TA50 214 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PAQR3Q6TCH7 311 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PIM3Q86V86 326 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 OR10T2Q8NGX3 314 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 MCMBPQ9BTE3 642 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 RSPH9Q9H1X1 276 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 SAMD4AQ9UPU9 718 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 C7orf72A4D263 438 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 EFNA1P20827 205 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 RCVRNP35243 200 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 SKP1P63208 163 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 CHIT1Q13231 466 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF267Q14586 743 aaPredicted RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 Q6ZVU0 165 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PIWIL3Q7Z3Z3 882 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ZFP90Q8TF47 636 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 TAS2R9Q9NYW1 312 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 WNT6Q9Y6F9 365 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ALDOAP04075 364 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PIGFQ07326 219 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 PTPRCAPQ14761 206 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 VITQ6UXI7 678 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 ZNF598Q86UK7 904 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 CAND1Q86VP6 1230 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 AMIGO1Q86WK6 493 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 UBE2J2Q8N2K1 259 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 GFM1Q96RP9 751 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 NAA50Q9GZZ1 169 aaKnown RBP12.84□□□□□ -0.35
TCOF1-213ENST00000514442 KLHL31Q9H511 634 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 INSL5Q9Y5Q6 135 aa12.84□□□□□ -0.35
TCOF1-213ENST00000514442 FGF18O76093 207 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 IFNA7P01567 189 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 GALTP07902 379 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 GALNT2Q10471 571 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 NANOGP8Q6NSW7 305 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 BHLHB9Q6PI77 547 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 SPERTQ8NA61 448 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 OR13J1Q8NGT2 312 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 BIRC7Q96CA5 298 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 CDK15Q96Q40 435 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 SLC30A2Q9BRI3 323 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 LRRC3Q9BY71 257 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 OR2AG1Q9H205 316 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 BTAF1O14981 1849 aa12.83□□□□□ -0.35
TCOF1-213ENST00000514442 ARPC4-TTLL3A0A0A6YYG9 625 aa12.83□□□□□ -0.36
TCOF1-213ENST00000514442 A0A1W2PQ67 120 aa12.83□□□□□ -0.36
TCOF1-213ENST00000514442 SIX3O95343 332 aaPredicted RBP12.83□□□□□ -0.36
TCOF1-213ENST00000514442 PSKH1P11801 424 aa12.83□□□□□ -0.36
TCOF1-213ENST00000514442 FEN1P39748 380 aaKnown RBP12.83□□□□□ -0.36
TCOF1-213ENST00000514442 APLP1P51693 650 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms