RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 NHSL2Q5HYW2 709 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 KIAA0319Q5VV43 1072 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 CDC73Q6P1J9 531 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 NEK5Q6P3R8 708 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 FAM171BQ6P995 826 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF280BQ86YH2 543 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PELI3Q8N2H9 469 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF614Q8N883 585 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 SLC38A2Q96QD8 506 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 OCEL1Q9H607 264 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 PLAC1Q9HBJ0 212 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 C11orf16Q9NQ32 467 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 POLE4Q9NR33 117 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ZDHHC3Q9NYG2 299 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF624Q9P2J8 865 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 GULP1Q9UBP9 304 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF282Q9UDV7 671 aaPredicted RBP8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 RNF6Q9Y252 685 aa8.21□□□□□ -1.1
LIMCH1-216ENST00000512820 COL16A1Q07092 1604 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 H3BM21 787 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 LSM1O15116 133 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SEPT4O43236 478 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 BCKDHAP12694 445 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CXCR2P25025 360 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 NTSP30990 170 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 MAGEA11P43364 429 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 GPR1P46091 355 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 PTPN5P54829 565 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SEMA3BQ13214 749 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 TYSND1Q2T9J0 566 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 HKDC1Q2TB90 917 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 PTCHD3Q3KNS1 767 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 LRRC73Q5JTD7 316 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 RAET1GQ6H3X3 334 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 C3orf58Q8NDZ4 430 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 C2orf15Q8WU43 125 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF558Q96NG5 402 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 OSBPL10Q9BXB5 764 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 NAA50Q9GZZ1 169 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 TPT1P8Q9HAU6 139 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 MAGED1Q9Y5V3 778 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 LYVE1Q9Y5Y7 322 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CPQQ9Y646 472 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 HAT1O14929 419 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ATG13O75143 517 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 BCAS1O75363 584 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ELNP15502 786 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 GJA8P48165 433 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CDKN1CP49918 316 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CCL23P55773 120 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SCN1BQ07699 218 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 DCST1Q5T197 706 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ZNF544Q6NX49 715 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 PLET1Q6UQ28 207 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 GPR150Q8NGU9 434 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 FRS2Q8WU20 508 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 COQ7Q99807 217 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CORO1BQ9BR76 489 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SPATA5L1Q9BVQ7 753 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SHANK3Q9BYB0 1731 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ABCB9Q9NP78 766 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 FLRT1Q9NZU1 646 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CD300AQ9UGN4 299 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 TMED5Q9Y3A6 229 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 A0A096LPI6 279 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 MTMR11A4FU01 709 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CASKO14936 926 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 UGT2B17O75795 530 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 RPN2P04844 631 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 RPS17P08708 135 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 BUD31P41223 144 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ALDH3B2P48448 385 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 HNMTP50135 292 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 APLP1P51693 650 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 AFF1P51825 1210 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 OR2B6P58173 313 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CYP4F8P98187 520 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 GANABQ14697 944 aaKnown RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 IQCCQ4KMZ1 466 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 LETMD1Q6P1Q0 360 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 NUDT18Q6ZVK8 323 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CACTIN-AS1Q8N1I8 211 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 TMCO6Q96DC7 493 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SPRTNQ9H040 489 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SEMA3GQ9NS98 782 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SNTG1Q9NSN8 517 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SLAMF8Q9P0V8 285 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SEC14L3Q9UDX4 400 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ENTPD4Q9Y227 616 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ASF1AQ9Y294 204 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 SPO11Q9Y5K1 396 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 C1QAP02745 245 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 ELFN1P0C7U0 828 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 OPRL1P41146 370 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 CLCN4P51793 760 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 RFTN2Q52LD8 501 aaPredicted RBP8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 GPAT3Q53EU6 434 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 HMBOX1Q6NT76 420 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 RNF111Q6ZNA4 994 aa8.2□□□□□ -1.1
LIMCH1-216ENST00000512820 DCDC5Q6ZRR9 648 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms