RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 LYSMD1Q96S90 227 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 ZFYVE21Q9BQ24 234 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 MGME1Q9BQP7 344 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 TUBB6Q9BUF5 446 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 RAB11FIP5Q9BXF6 653 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 LRRC27Q9C0I9 530 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 SLC39A8Q9C0K1 460 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 SCAND2PQ9GZW5 306 aaPredicted RBP3.12□□□□□ -1.91
TCOF1-208ENST00000506063 THAP2Q9H0W7 228 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 BLZF1Q9H2G9 400 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 CXorf56Q9H5V9 222 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 MAGEF1Q9HAY2 307 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 METTL14Q9HCE5 456 aaKnown RBP3.12□□□□□ -1.91
TCOF1-208ENST00000506063 SH2D2AQ9NP31 389 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 CUTCQ9NTM9 273 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 EURLQ9NYK6 297 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 ACTR10Q9NZ32 417 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 KIAA1468Q9P260 1216 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 SPRR3Q9UBC9 169 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 ZNF282Q9UDV7 671 aaPredicted RBP3.12□□□□□ -1.91
TCOF1-208ENST00000506063 TMEM59LQ9UK28 342 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 STAP1Q9ULZ2 295 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 PLCL2Q9UPR0 1127 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 EIF3LQ9Y262 564 aaKnown RBP3.12□□□□□ -1.91
TCOF1-208ENST00000506063 FRMD4BQ9Y2L6 1034 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 CLIC4Q9Y696 253 aa3.12□□□□□ -1.91
TCOF1-208ENST00000506063 A0A0A6YYJ9 748 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PVALEFA0A1B0GWK0 134 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 GTPBP10A4D1E9 387 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 GOLGA6L4A6NEF3 574 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ARHGEF33A8MVX0 844 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 BECN2A8MW95 431 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 FAM47E-STBD1D6RA91 191 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 SLCO1B7G3V0H7 640 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 UBFD1O14562 309 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 SLC16A5O15375 505 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PIN1P1O15428 100 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 SEC24DO94855 1032 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CDK14O94921 469 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PLAUP00749 431 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 UQCRHP07919 91 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 SOD3P08294 240 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 DANCRP0C864 163 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 TPBGLP0DKB5 382 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ZSCAN22P10073 491 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 UGT1A1P22309 533 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ZFP36P26651 326 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 TPP2P29144 1249 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 TRHRP34981 398 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 TIMP3P35625 211 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PSMC2P35998 433 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ME1P48163 572 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PAPOLAP51003 745 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 AGFG1P52594 562 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ARFIP2P53365 341 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ITGA8P53708 1063 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ARSFP54793 590 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 GPR85P60893 370 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 AP2B1P63010 937 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 SNRPNP63162 240 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 FANCCQ00597 558 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 OC90Q02509 493 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PRKAA1Q13131 559 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CUL4BQ13620 913 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 RFTN1Q14699 578 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 BTBD16Q32M84 506 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 FOXD4L5Q5VV16 416 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CYB5R2Q6BCY4 276 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ATL3Q6DD88 541 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 TTI2Q6NXR4 508 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 PLXDC2Q6UX71 529 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 SEZ6L2Q6UXD5 910 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CCBE1Q6UXH8 406 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 LANCL3Q6ZV70 420 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 MAATS1Q7Z4T9 603 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 MDGA2Q7Z553 956 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CEP57L1Q8IYX8 460 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ARMC10Q8N2F6 343 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ARHGEF39Q8N4T4 335 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 NPWQ8N729 165 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 HORMAD2Q8N7B1 307 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ZNF611Q8N823 705 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 AMER3Q8N944 861 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 RASGEF1AQ8N9B8 481 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 C1orf131Q8NDD1 294 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 GPR26Q8NDV2 337 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ACVR1CQ8NER5 493 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 ENOX1Q8TC92 643 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 GPT2Q8TD30 523 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 FOXD4L4Q8WXT5 416 aaPredicted RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 KAT2AQ92830 837 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CCDC47Q96A33 483 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 NTNG2Q96CW9 530 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 MSI2Q96DH6 328 aaKnown RBP3.11□□□□□ -1.91
TCOF1-208ENST00000506063 LRRC46Q96FV0 321 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 CAPZA3Q96KX2 299 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 C10orf90Q96M02 699 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 C12orf66Q96MD2 445 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 TMEM204Q9BSN7 226 aa3.11□□□□□ -1.91
TCOF1-208ENST00000506063 NUP85Q9BW27 656 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms