RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 NCF4Q15080 339 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 ZC3H12BQ5HYM0 836 aaKnown RBP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 RHBDD2Q6NTF9 364 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 ATG14Q6ZNE5 492 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 SYDE1Q6ZW31 735 aaPredicted RBP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 LMNTD2Q8IXW0 634 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 OR2L3Q8NG85 312 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 OR2A1Q8NGT9 310 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 THAP4Q8WY91 577 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 KCNJ9Q92806 393 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 ZUFSPQ96AP4 578 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 DPH2Q9BQC3 489 aaPredicted RBP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 ACSS2Q9NR19 701 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 SPATA7Q9P0W8 599 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 ZC3H7BQ9UGR2 993 aaKnown RBP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 TRMT6Q9UJA5 497 aaKnown RBP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 TUBD1Q9UJT1 453 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 TP53TG5Q9Y2B4 290 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 MED16Q9Y2X0 877 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 SNX24Q9Y343 169 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 DHRS7Q9Y394 339 aa16.95■□□□□ 0.3
COL6A1-204ENST00000486023 PTRH2Q9Y3E5 179 aaKnown RBP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.95■□□□□ 0.3
COL6A1-204ENST00000486023 HELZ2Q9BYK8 2649 aaKnown RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 EFCAB8A8MWE9 144 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 H3BMH7 237 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 SUV39H1O43463 412 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 ZBTB14O43829 449 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 PRICKLE3O43900 615 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 NRP2O60462 931 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 PSIP1O75475 530 aaKnown RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 TTC4O95801 387 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 CMPK1P30085 196 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 MORF4L2Q15014 288 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 LACTB2Q53H82 288 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 THEMIS2Q5TEJ8 643 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 UBE2R2Q712K3 238 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 PIWIL4Q7Z3Z4 852 aaKnown RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 ADCK2Q7Z695 626 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 C2CD4AQ8NCU7 369 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 GABPB2Q8TAK5 448 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 DPH7Q9BTV6 452 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 CHRNA10Q9GZZ6 450 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 ING2Q9H160 280 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 STOX2Q9P2F5 926 aaPredicted RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 TAC3Q9UHF0 121 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 SRPK3Q9UPE1 567 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 PADI2Q9Y2J8 665 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 COMMD10Q9Y6G5 202 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 SPTBP11277 2137 aa16.94■□□□□ 0.3
COL6A1-204ENST00000486023 TLN1Q9Y490 2541 aaKnown RBP16.94■□□□□ 0.3
COL6A1-204ENST00000486023 A0A1W2PPV9 198 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 CCDC188H7C350 402 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 FANCGO15287 622 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 CTSVO60911 334 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 RECKO95980 971 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 CASQ1P31415 396 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 PMS2P54278 862 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 PNLIPRP1P54315 467 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 ARL4CP56559 192 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 HIF1AQ16665 826 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 CYP2A13Q16696 494 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 NKAIN1Q4KMZ8 207 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 WASHC2DQ5SRD0 308 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 RBM20Q5T481 1227 aaKnown RBP16.93■□□□□ 0.3
COL6A1-204ENST00000486023 ZNF385CQ66K41 422 aaPredicted RBP16.93■□□□□ 0.3
COL6A1-204ENST00000486023 FRMPD2BQ6IN97 320 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 ASB18Q6ZVZ8 466 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 GPATCH11Q8N954 259 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 TTC29Q8NA56 475 aaPredicted RBP16.93■□□□□ 0.3
COL6A1-204ENST00000486023 HMGCLL1Q8TB92 370 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 CD200R1Q8TD46 325 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 EEF1AKMT1Q8WVE0 214 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 SMPDL3AQ92484 453 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 DLG3Q92796 817 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 ALKBH8Q96BT7 664 aaKnown RBP16.93■□□□□ 0.3
COL6A1-204ENST00000486023 CERS2Q96G23 380 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 SNF8Q96H20 258 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 GBP5Q96PP8 586 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 NAT9Q9BTE0 207 aa16.93■□□□□ 0.3
COL6A1-204ENST00000486023 MRPS30Q9NP92 439 aaKnown RBP16.93■□□□□ 0.3
COL6A1-204ENST00000486023 SPTA1P02549 2419 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 TARM1B6A8C7 271 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 MYO1CO00159 1063 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 SLC16A8O95907 504 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 AHSGP02765 367 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 MPC1LP0DKB6 136 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 SAT1P21673 171 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 GABRB3P28472 473 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 FOLR3P41439 243 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 PGGT1BP53609 377 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 ARSFP54793 590 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 CDKN2DP55273 166 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 RAPSNQ13702 412 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 GRM7Q14831 915 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 UGT3A1Q6NUS8 523 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 HIBCHQ6NVY1 386 aaPredicted RBP16.92■□□□□ 0.3
COL6A1-204ENST00000486023 TRMT10BQ6PF06 316 aaKnown RBP16.92■□□□□ 0.3
COL6A1-204ENST00000486023 CYHR1Q6ZMK1 362 aa16.92■□□□□ 0.3
COL6A1-204ENST00000486023 PALM2Q8IXS6 379 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms