RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 WNT16Q9UBV4 365 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 TMED3Q9Y3Q3 217 aa4.81□□□□□ -1.64
UPF3B-203ENST00000478840 A0A0B4J203 849 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 DNAJC9-AS1A6NH13 148 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 SLC9B1P1A6NJY1 282 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 SNX3O60493 162 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 RPS6KA5O75582 802 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 RAD51DO75771 328 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 BCAS2O75934 225 aaPredicted RBP4.8□□□□□ -1.64
UPF3B-203ENST00000478840 PTMAP06454 111 aaKnown RBP4.8□□□□□ -1.64
UPF3B-203ENST00000478840 DAOP14920 347 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 HOXA11P31270 313 aaPredicted RBP4.8□□□□□ -1.64
UPF3B-203ENST00000478840 MNDAP41218 407 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 NPBWR1P48145 328 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 PDX1P52945 283 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 GAGE5Q13069 117 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 GAGE6Q13070 117 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 ASPRV1Q53RT3 343 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 FAM166AQ6J272 317 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 C1QL2Q7Z5L3 287 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 MEX3DQ86XN8 651 aaKnown RBP4.8□□□□□ -1.64
UPF3B-203ENST00000478840 DNAJC10Q8IXB1 793 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 KLHDC8AQ8IYD2 350 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 OR4K1Q8NGD4 311 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 LRRC8CQ8TDW0 803 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 ELP5Q8TE02 316 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 UBLCP1Q8WVY7 318 aaPredicted RBP4.8□□□□□ -1.64
UPF3B-203ENST00000478840 CKAP2Q8WWK9 683 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 THOC1Q96FV9 657 aaKnown RBP4.8□□□□□ -1.64
UPF3B-203ENST00000478840 BICD1Q96G01 975 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 FAM20AQ96MK3 541 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 GDAP1L1Q96MZ0 367 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 PANX3Q96QZ0 392 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 PRRG4Q9BZD6 226 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 ACTL8Q9H568 366 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 TCF7L2Q9NQB0 619 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 HMG20BQ9P0W2 317 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 EPS15L1Q9UBC2 864 aa4.8□□□□□ -1.64
UPF3B-203ENST00000478840 A0A0A6YYC8 382 aaPredicted RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 A0A1W2PPI3 338 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 I3L1I5 382 aaPredicted RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 O00370 1275 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 SYNGR3O43761 229 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 BAG4O95429 457 aaKnown RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 MOCS2O96007 188 aaPredicted RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 CDH1P12830 882 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 GAP43P17677 238 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 CALRP27797 417 aaKnown RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 CDC25AP30304 524 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 CD86P42081 329 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 VAMP7P51809 220 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 SULT2A1Q06520 285 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 KLC1Q07866 573 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ZBTB17Q13105 803 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 KIR2DS3Q14952 304 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ITPRIPL2Q3MIP1 535 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ZNF260Q3ZCT1 412 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ZNF425Q6IV72 752 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 FAM43BQ6ZT52 329 aaPredicted RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 PRSS42Q7Z5A4 293 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 GPR141Q7Z602 305 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ANKRD46Q86W74 232 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 SFR1Q86XK3 245 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ERC1Q8IUD2 1116 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 MMD2Q8IY49 270 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ZNF441Q8N8Z8 693 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 SLC26A7Q8TE54 656 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 CDK19Q9BWU1 502 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 SEZ6LQ9BYH1 1024 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 MIS12Q9H081 205 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 APOBEC3GQ9HC16 384 aaKnown RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 DAPK2Q9UIK4 370 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 RALYQ9UKM9 306 aaKnown RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 ISY1Q9ULR0 285 aaKnown RBP4.79□□□□□ -1.64
UPF3B-203ENST00000478840 KLK4Q9Y5K2 254 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 TEX264Q9Y6I9 313 aa4.79□□□□□ -1.64
UPF3B-203ENST00000478840 A0A1W2PN81 502 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 FAM149AA5PLN7 773 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 CD8B2A6NJW9 211 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 TMEM150CB9EJG8 249 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 F8VVB4 439 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 F8VWA3 439 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 CAPN9O14815 690 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 ARPC2O15144 300 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 OAZ2O95190 189 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 JAK1P23458 1154 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 PIK3R1P27986 724 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 SERPINB6P35237 376 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 CHRNA7P36544 502 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 OR3A1P47881 315 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 GLIPR1P48060 266 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 SERPINH1P50454 418 aaKnown RBP4.78□□□□□ -1.64
UPF3B-203ENST00000478840 UCP2P55851 309 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 NANOS3P60323 173 aaKnown RBP4.78□□□□□ -1.64
UPF3B-203ENST00000478840 CACNG1Q06432 222 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 DMPKQ09013 629 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 RASGEF1BQ0VAM2 473 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 KIF5AQ12840 1032 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 SNTA1Q13424 505 aa4.78□□□□□ -1.64
UPF3B-203ENST00000478840 PHKG1Q16816 387 aa4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms