RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 TBR1Q16650 682 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 DNTTIP2Q5QJE6 756 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CAPRIN2Q6IMN6 1127 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 DUS1LQ6P1R4 473 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 BORAQ6PGQ7 559 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 C6orf15Q6UXA7 325 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 PPP1R21Q6ZMI0 780 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 TIPARPQ7Z3E1 657 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SERPINA9Q86WD7 417 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 LSRQ86X29 649 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 RASGRP3Q8IV61 690 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CARFQ8N187 725 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 TAB3Q8N5C8 712 aaPredicted RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CCDC89Q8N998 374 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 DNAAF3Q8N9W5 541 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SIDT2Q8NBJ9 832 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 ACVR1CQ8NER5 493 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 OR52K1Q8NGK4 314 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 STAMBPL1Q96FJ0 436 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CDKN2AIPNLQ96HQ2 116 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC45A3Q96JT2 553 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC41A2Q96JW4 573 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 RMDN2Q96LZ7 410 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 CATSPER2Q96P56 530 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 PDE7BQ9NP56 450 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 PIH1D1Q9NWS0 290 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 HRASLS2Q9NWW9 162 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SEMA5BQ9P283 1151 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SLC24A2Q9UI40 661 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF148Q9UQR1 794 aa6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 SNRNP200O75643 2136 aaKnown RBP6.61□□□□□ -1.35
CCDC88A-213ENST00000476903 IGHV5-51A0A0C4DH38 117 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 LOC101059948A0A1B0GTJ6 334 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 CCDC78A2IDD5 438 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 HEATR9A2RTY3 570 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 OR6C74A6NCV1 312 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 GOLGA6L3A6NEY3 463 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 HMGB1P1B2RPK0 211 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 F8W8V4 182 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 OVOL3O00110 214 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 MATN2O00339 956 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 SPAG6O75602 509 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 KIAA0754O94854 1291 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 SUN1O94901 812 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 FTH1P02794 183 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 MT-ND3P03897 115 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PLA2G2AP14555 144 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ADRA1DP25100 572 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PSMA3P25788 255 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 MSNP26038 577 aaKnown RBP6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 NSG1P42857 185 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 CD151P48509 253 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 RNF4P78317 190 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 HSD11B2P80365 405 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ACY1Q03154 408 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 CDC20Q12834 499 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 NFATC3Q12968 1075 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PRKAA1Q13131 559 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 RPA4Q13156 261 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 SEMA5AQ13591 1074 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 SNX1Q13596 522 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ITIH4Q14624 930 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 CCNG2Q16589 344 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 CCDC38Q502W7 563 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 TMTC4Q5T4D3 741 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 LYPLAL1Q5VWZ2 237 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 AFTPHQ6ULP2 937 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 C4orf22Q6V702 233 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PACS1Q6VY07 963 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ZNF662Q6ZS27 426 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 NLRP9Q7RTR0 991 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PIANPQ8IYJ0 282 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 UNC5BQ8IZJ1 945 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 D2HGDHQ8N465 521 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 LILRA3Q8N6C8 439 aaPredicted RBP6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 EXD3Q8N9H8 876 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 NUP43Q8NFH3 380 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 OR4E2Q8NGC2 313 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 OR13J1Q8NGT2 312 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 MAIP1Q8WWC4 291 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 C1orf54Q8WWF1 131 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 LCN9Q8WX39 176 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 STARD8Q92502 1023 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ELMO2Q96JJ3 720 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 FCRL4Q96PJ5 515 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 FERD3LQ96RJ6 166 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 RANBP9Q96S59 729 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 TTC1Q99614 292 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 MAP3K3Q99759 626 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PRDM14Q9GZV8 571 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 OR52A5Q9H2C5 316 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 ADNPQ9H2P0 1102 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 SRMSQ9H3Y6 488 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 MVB12BQ9H7P6 319 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 COG4Q9H9E3 785 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 LZTFL1Q9NQ48 299 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 SMARCAL1Q9NZC9 954 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 PAK5Q9P286 719 aa6.6□□□□□ -1.35
CCDC88A-213ENST00000476903 LNPEPQ9UIQ6 1025 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms