RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 SLC26A3P40879 764 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 CCDC85BQ15834 202 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 FBXO46Q6PJ61 603 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 VITQ6UXI7 678 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 GLYATL1Q969I3 302 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 RIMS3Q9UJD0 308 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 PRAMEF33A0A0G2JMD5 474 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 KLK1P06870 262 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ELK4P28324 431 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC7A1P30825 629 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 MNX1P50219 401 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC7A9P82251 487 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 PRAMEF14Q5SWL7 426 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ACBD5Q5T8D3 534 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 GPR107Q5VW38 600 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 Q6ZNB5 142 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 OLIG3Q7RTU3 272 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 HID1Q8IV36 788 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 AHI1Q8N157 1196 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 UTP15Q8TED0 518 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF483Q8TF39 744 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 EXOSC8Q96B26 276 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 OTULINQ96BN8 352 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 POLR1BQ9H9Y6 1135 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ORC6Q9Y5N6 252 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 FXYD1O00168 92 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 MID1O15344 667 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 FZD6O60353 706 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 SOCS5O75159 536 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 VPS4BO75351 444 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 NUDT7P0C024 238 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 C6P13671 934 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 CLCN4P51793 760 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 C2orf80Q0P641 193 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 SGCGQ13326 291 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 TMED1Q13445 227 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 HERC3Q15034 1050 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 TNFAIP8L2Q6P589 184 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 HEATR4Q86WZ0 1026 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 PHYKPLQ8IUZ5 450 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 PLA2G15Q8NCC3 412 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ADCY4Q8NFM4 1077 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 TMBIM1Q969X1 311 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 TMEM125Q96AQ2 219 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF689Q96CS4 500 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 VWCEQ96DN2 955 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 RSPRY1Q96DX4 576 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 FERD3LQ96RJ6 166 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 P2RY12Q9H244 342 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 RHCGQ9UBD6 479 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 KNTC1P50748 2209 aa13.35□□□□□ -0.27
CCDC88A-211ENST00000471947 MICAL3Q7RTP6 2002 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 FAM186AA6NE01 2351 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ELOVL7A1L3X0 281 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 OR52A4PA6NMU1 304 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 H7BY64 318 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 FSHRP23945 695 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 GPC1P35052 558 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TP53BP2Q13625 1128 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF805Q5CZA5 627 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 LPCAT2Q7L5N7 544 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 MMP21Q8N119 569 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 OR5AR1Q8NGP9 310 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 OR10G6Q8NH81 332 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 CLP1Q92989 425 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 PRAP1Q96NZ9 151 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ADI1Q9BV57 179 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TRIM39Q9HCM9 518 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 EQTNQ9NQ60 294 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 MYRFQ9Y2G1 1151 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ANKDD1BA6NHY2 528 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 WASHC1A8K0Z3 465 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC28A1O00337 649 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 CXCR6O00574 342 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 LSM1O15116 133 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 HTRA2O43464 458 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 NOL3O60936 208 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TNFAIP8O95379 198 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 FGF4P08620 206 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 LAMP1P11279 417 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 MADCAM1Q13477 382 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF234Q14588 700 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 C16orf72Q14CZ0 275 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 WASH2PQ6VEQ5 465 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 LIPIQ6XZB0 460 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 FAM129CQ86XR2 697 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 NUS1Q96E22 293 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 SLC47A1Q96FL8 570 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 SUCOQ9UBS9 1254 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 RAB23Q9ULC3 237 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 OARD1Q9Y530 152 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 PCDHB14Q9Y5E9 798 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 TRPM6Q9BX84 2022 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 DEAF1O75398 565 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ZNF8P17098 575 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 ADSLP30566 484 aaPredicted RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 GRIA2P42262 883 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 IDH2P48735 452 aaKnown RBP13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 INHBCP55103 352 aa13.34□□□□□ -0.27
CCDC88A-211ENST00000471947 NKX3-2P78367 333 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms