RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 KIR2DS3Q14952 304 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 PTCHD3Q3KNS1 767 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 ARMC6Q6NXE6 501 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 SPESP1Q6UW49 350 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 RBM44Q6ZP01 1051 aaKnown RBP14.27□□□□□ -0.13
COL9A3-209ENST00000469852 PLXDC1Q8IUK5 500 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 CNPY4Q8N129 248 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 CHCHD4Q8N4Q1 142 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 RAB42Q8N4Z0 105 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 OR4D9Q8NGE8 314 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 OR2A1Q8NGT9 310 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 OR56A3Q8NH54 315 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 ADAMTS14Q8WXS8 1223 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 SMPDL3AQ92484 453 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 TLCD1Q96CP7 247 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 TSNARE1Q96NA8 513 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 OR4K3Q96R72 315 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 MIPEPQ99797 713 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 MRPL57Q9BQC6 102 aaKnown RBP14.27□□□□□ -0.13
COL9A3-209ENST00000469852 SGPP1Q9BX95 441 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 MRPL46Q9H2W6 279 aaKnown RBP14.27□□□□□ -0.13
COL9A3-209ENST00000469852 MKS1Q9NXB0 559 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 PDP2Q9P2J9 529 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 SLC17A7Q9P2U7 560 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 TAC3Q9UHF0 121 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 DCDC2Q9UHG0 476 aa14.27□□□□□ -0.13
COL9A3-209ENST00000469852 PTBP2Q9UKA9 531 aaKnown RBP14.27□□□□□ -0.13
COL9A3-209ENST00000469852 PMS2P1A4D2B8 440 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 FAM149AA5PLN7 773 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 PABPN1LA6NDY0 278 aaKnown RBP14.26□□□□□ -0.13
COL9A3-209ENST00000469852 TYROBPO43914 113 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 NRP2O60462 931 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 PLIN3O60664 434 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 CSO75390 466 aaKnown RBP14.26□□□□□ -0.13
COL9A3-209ENST00000469852 ST6GAL1P15907 406 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 OAS2P29728 719 aaKnown RBP14.26□□□□□ -0.13
COL9A3-209ENST00000469852 HSPA7P48741 367 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 ZIC1Q15915 447 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 PFKFB4Q16877 469 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 TTMPQ5BVD1 217 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 KIAA1614Q5VZ46 1190 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 SULT1C3Q6IMI6 304 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 ARHGAP22Q7Z5H3 698 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 RAB44Q7Z6P3 723 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-209ENST00000469852 CROCCP2Q86T23 111 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 LCA5Q86VQ0 697 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 WDR48Q8TAF3 677 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 ZDHHC12Q96GR4 267 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 SMC6Q96SB8 1091 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 SH3GL2Q99962 352 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 PITPNM3Q9BZ71 974 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 SLC6A20Q9NP91 592 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 CCDC177Q9NQR7 707 aaPredicted RBP14.26□□□□□ -0.13
COL9A3-209ENST00000469852 WWOXQ9NZC7 414 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 ENTPD2Q9Y5L3 495 aa14.26□□□□□ -0.13
COL9A3-209ENST00000469852 IGKV1-8A0A0C4DH67 115 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 A0A1W2PNU3 283 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CCDC189A1A4V9 331 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 TLCD2A6NGC4 264 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SYCE1LA8MT33 242 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 A8MT66 165 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 G3V2L1 256 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 MATN2O00339 956 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SIX3O95343 332 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 GFAPP14136 432 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 MAGP20916 626 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 RPA3P35244 121 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 GGT5P36269 586 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 HSD17B2P37059 387 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CCT5P48643 541 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SEPHS1P49903 392 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 INHBCP55103 352 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 MPP2Q14168 576 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 C16orf72Q14CZ0 275 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SETDB1Q15047 1291 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SF1Q15637 639 aaKnown RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CLPPQ16740 277 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SLC5A12Q1EHB4 618 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 ISXQ2M1V0 245 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CDKL4Q5MAI5 379 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 PHF19Q5T6S3 580 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CACHD1Q5VU97 1274 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 PRAMEF13Q5VWM6 474 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 PRSS42Q7Z5A4 293 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 THOC6Q86W42 341 aaKnown RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 KLHDC8AQ8IYD2 350 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 FBXO39Q8N4B4 442 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 PTGR2Q8N8N7 351 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 DCBLD1Q8N8Z6 715 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 OR2L3Q8NG85 312 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 TCP10LQ8TDR4 215 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 ATL1Q8WXF7 558 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 PHF21BQ96EK2 531 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 TRAPPC9Q96Q05 1148 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 ACSS2Q9NR19 701 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CUEDC1Q9NWM3 386 aaPredicted RBP14.25□□□□□ -0.13
COL9A3-209ENST00000469852 SENP1Q9P0U3 644 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 ANGPTL2Q9UKU9 493 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 GRID1Q9ULK0 1009 aa14.25□□□□□ -0.13
COL9A3-209ENST00000469852 CLCA2Q9UQC9 943 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms