RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 FRG2BQ96QU4 278 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 CPEB1Q9BZB8 566 aaKnown RBP18.55■□□□□ 0.56
VIM-203ENST00000469543 TMEM45AQ9NWC5 275 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 ZNF510Q9Y2H8 683 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 TRANK1O15050 2925 aa18.55■□□□□ 0.56
VIM-203ENST00000469543 NUAK1O60285 661 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 MITFO75030 526 aaPredicted RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 PARNO95453 639 aaKnown RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 ZNF682O95780 498 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 CBSLP0DN79 551 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 CD247P20963 164 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 CBSP35520 551 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 ESRRGP62508 458 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 ZBED5Q49AG3 693 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 FGD3Q5JSP0 725 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 NOXRED1Q6NXP6 359 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 GALNT5Q7Z7M9 940 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 UGT2B28Q9BY64 529 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 ING2Q9H160 280 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 TDP1Q9NUW8 608 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 DCAF13Q9NV06 445 aaKnown RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 SNX6Q9UNH7 406 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 COQ6Q9Y2Z9 468 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 ZNF106Q9H2Y7 1883 aaKnown RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 ARHGEF33A8MVX0 844 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 RFXANKO14593 260 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 AMD1P17707 334 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 TSTA3Q13630 321 aaPredicted RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 TMEM259Q4ZIN3 620 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 LRRC23Q53EV4 343 aaPredicted RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 XKR6Q5GH73 641 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 ELMOD1Q8N336 334 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 CCDC115Q96NT0 180 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 SAMD11Q96NU1 681 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 MYOCQ99972 504 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 REXO4Q9GZR2 422 aaKnown RBP18.54■□□□□ 0.56
VIM-203ENST00000469543 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.54■□□□□ 0.56
VIM-203ENST00000469543 FAM118AQ9NWS6 357 aa18.54■□□□□ 0.56
VIM-203ENST00000469543 A0A1W2PPW3 197 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 TRIM64CA6NLI5 447 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 PLK4O00444 970 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 HS6ST1O60243 411 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 GBAP04062 536 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 MATN1P21941 496 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 NR4A1P22736 598 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 IRF8Q02556 426 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 NAE1Q13564 534 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 PRR23BQ6ZRT6 265 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 R3HCC1LQ7Z5L2 792 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 GPR180Q86V85 440 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 ERI1Q8IV48 349 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 MCOLN3Q8TDD5 553 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 GAB3Q8WWW8 586 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 PAWRQ96IZ0 340 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 ZNF641Q96N77 438 aaPredicted RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 LRRC3BQ96PB8 259 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 OR4K3Q96R72 315 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 MBOAT4Q96T53 435 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 CPPED1Q9BRF8 314 aaPredicted RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 WRAP53Q9BUR4 548 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 ZDHHC4Q9NPG8 344 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 SPHK2Q9NRA0 654 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 E2F6O75461 281 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 CPSF4O95639 269 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 BDKRB1P46663 353 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 KCNAB2Q13303 367 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 GBX1Q14549 363 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 CTU2Q2VPK5 515 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 ZNF621Q6ZSS3 439 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 VTCN1Q7Z7D3 282 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 RASGEF1AQ8N9B8 481 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 KCNH6Q9H252 994 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 DNAJC11Q9NVH1 559 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 THG1LQ9NWX6 298 aaKnown RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 CXXC1Q9P0U4 656 aaPredicted RBP18.53■□□□□ 0.56
VIM-203ENST00000469543 DNAJB9Q9UBS3 223 aa18.53■□□□□ 0.56
VIM-203ENST00000469543 SLC16A8O95907 504 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 TIMP2P16035 220 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 IL1RL1Q01638 556 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 CCNYL2Q5T2Q4 361 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 ZCCHC8Q6NZY4 707 aaKnown RBP18.52■□□□□ 0.56
VIM-203ENST00000469543 ADAMTS16Q8TE57 1224 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 PANX1Q96RD7 426 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 OSBPL10Q9BXB5 764 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 SLC29A3Q9BZD2 475 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 ABCG2Q9UNQ0 655 aa18.52■□□□□ 0.56
VIM-203ENST00000469543 H3BMQ9 156 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 C8GP07360 202 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 C7P10643 843 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 FSHRP23945 695 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 RECQLP46063 649 aaPredicted RBP18.52■□□□□ 0.55
VIM-203ENST00000469543 PPP2R2BQ00005 443 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 UGT8Q16880 541 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 LRRC70Q7Z2Q7 622 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 GPR149Q86SP6 731 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 COG8Q96MW5 612 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 NRTNQ99748 197 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 FANCEQ9HB96 536 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 ERVW-1Q9UQF0 538 aa18.52■□□□□ 0.55
VIM-203ENST00000469543 PRUNE2Q8WUY3 3088 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms