RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 STIP1P31948 543 aaKnown RBP21.63■■□□□ 1.05
USP4-208ENST00000464168 PPARGP37231 505 aaPredicted RBP21.63■■□□□ 1.05
USP4-208ENST00000464168 VSX2P58304 361 aaPredicted RBP21.63■■□□□ 1.05
USP4-208ENST00000464168 TLR1Q15399 786 aa21.63■■□□□ 1.05
USP4-208ENST00000464168 WASHC2DQ5SRD0 308 aa21.63■■□□□ 1.05
USP4-208ENST00000464168 B3GNTL1Q67FW5 361 aaPredicted RBP21.63■■□□□ 1.05
USP4-208ENST00000464168 PPP1R21Q6ZMI0 780 aa21.63■■□□□ 1.05
USP4-208ENST00000464168 TTC29Q8NA56 475 aaPredicted RBP21.63■■□□□ 1.05
USP4-208ENST00000464168 KLK4Q9Y5K2 254 aa21.63■■□□□ 1.05
USP4-208ENST00000464168 ZGRF1Q86YA3 2104 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 SRPX2O60687 465 aaPredicted RBP21.62■■□□□ 1.05
USP4-208ENST00000464168 FKBP9O95302 570 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 FTCDO95954 541 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 FDFT1P37268 417 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 PRAMEP78395 509 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 ISLR2Q6UXK2 745 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 NLRP9Q7RTR0 991 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 CATSPER1Q8NEC5 780 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 LMF1Q96S06 567 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 EPS8L2Q9H6S3 715 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 MARCH4Q9P2E8 410 aaPredicted RBP21.62■■□□□ 1.05
USP4-208ENST00000464168 TCAF1Q9Y4C2 921 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 CROCCQ5TZA2 2017 aa21.62■■□□□ 1.05
USP4-208ENST00000464168 HYKKA2RU49 373 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 KRT87PA6NCN2 255 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 PRMT5O14744 637 aaPredicted RBP21.61■■□□□ 1.05
USP4-208ENST00000464168 KLHL18O94889 574 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 PSMB5P28074 263 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 KLC1Q07866 573 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 OASLQ15646 514 aaKnown RBP21.61■■□□□ 1.05
USP4-208ENST00000464168 CCSMST1Q4G0I0 132 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 FRMPD2BQ6IN97 320 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 LINC00696Q6ZRV3 163 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 SLC34A3Q8N130 599 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 STT3BQ8TCJ2 826 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 RAD51AP1Q96B01 352 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 VPS50Q96JG6 964 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 MIPEPQ99797 713 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 CRB3Q9BUF7 120 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 RAB11FIP5Q9BXF6 653 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 ZNF304Q9HCX3 659 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 TTC7AQ9ULT0 858 aaPredicted RBP21.61■■□□□ 1.05
USP4-208ENST00000464168 NFS1Q9Y697 457 aa21.61■■□□□ 1.05
USP4-208ENST00000464168 LOC105369274A0A096LPK9 316 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 LOC102723532A0A0G2JNH3 316 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 LIASO43766 372 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 NRP2O60462 931 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 HPP00738 406 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 PER3P56645 1201 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 MFAP5Q13361 173 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 TMED2Q15363 201 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 ZRSR2Q15696 482 aaKnown RBP21.6■■□□□ 1.05
USP4-208ENST00000464168 AARS2Q5JTZ9 985 aaKnown RBP21.6■■□□□ 1.05
USP4-208ENST00000464168 TTC23LQ6PF05 361 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 SYCE1Q8N0S2 351 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 OR4N4Q8N0Y3 316 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 HMGCLL1Q8TB92 370 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 PEX13Q92968 403 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 HES6Q96HZ4 224 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 SLX1AQ9BQ83 275 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 CHRAC1Q9NRG0 131 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 CATSPERZQ9NTU4 200 aa21.6■■□□□ 1.05
USP4-208ENST00000464168 ZC3H7BQ9UGR2 993 aaKnown RBP21.6■■□□□ 1.05
USP4-208ENST00000464168 A0A0U1RQJ8 604 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 E7EVH7 732 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 C1orf105O95561 183 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 IFNB1P01574 187 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 ZGLP1P0C6A0 271 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 BDKRB1P46663 353 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 CARSP49589 748 aaKnown RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 ATG9BQ674R7 924 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 PTRHD1Q6GMV3 140 aaKnown RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 RPUSD3Q6P087 351 aaKnown RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 KIAA1328Q86T90 577 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 PRUNE1Q86TP1 453 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 SRRM1Q8IYB3 904 aaKnown RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 PRSS58Q8IYP2 241 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 OR2L3Q8NG85 312 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 OR2A1Q8NGT9 310 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 MIEF2Q96C03 454 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 C8orf44Q96CB5 159 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 P2RY12Q9H244 342 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 ZNF160Q9HCG1 818 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 RAB6BQ9NRW1 208 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 STOX2Q9P2F5 926 aaPredicted RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 ZNF282Q9UDV7 671 aaPredicted RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 ANAPC5Q9UJX4 755 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 RUVBL2Q9Y230 463 aaKnown RBP21.59■■□□□ 1.05
USP4-208ENST00000464168 OTOGQ6ZRI0 2925 aa21.59■■□□□ 1.05
USP4-208ENST00000464168 A0A0J9YVX5 310 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 A0A1W2PPV9 198 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 CD3EAPO15446 510 aaKnown RBP21.58■■□□□ 1.05
USP4-208ENST00000464168 ZG16O60844 167 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 STSP08842 583 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 ETS1P14921 441 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 ACPPP15309 386 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 TNFRSF8P28908 595 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 TTPAP49638 278 aa21.58■■□□□ 1.05
USP4-208ENST00000464168 YBX1P67809 324 aaKnown RBP21.58■■□□□ 1.05
USP4-208ENST00000464168 OCA2Q04671 838 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms