RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 MBTPS1Q14703 1052 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ZBED5Q49AG3 693 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TMEM240Q5SV17 173 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 GPR153Q6NV75 609 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MED27Q6P2C8 311 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 GALNT18Q6P9A2 607 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TRIM40Q6P9F5 258 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 GALNT10Q86SR1 603 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 CYP4Z1Q86W10 505 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 CROCCP3Q8IVE0 287 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF614Q8N883 585 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 C11orf65Q8NCR3 313 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 FAM81AQ8TBF8 368 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 OR8D1Q8WZ84 308 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TMEM125Q96AQ2 219 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 C12orf43Q96C57 262 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 PPP1R16AQ96I34 528 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 SMAD5Q99717 465 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 HMG20AQ9NP66 347 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 DDX28Q9NUL7 540 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TDP1Q9NUW8 608 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 PAPPA2Q9BXP8 1791 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 CROCCQ5TZA2 2017 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ACOT8O14734 319 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 PDYNP01213 254 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 PRPS1L1P21108 318 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 BDKRB1P46663 353 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MANFP55145 182 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 SRSF11Q05519 484 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TEAD2Q15562 447 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 SDE2Q6IQ49 451 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 LCN8Q6JVE9 175 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ATG14Q6ZNE5 492 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 PRICKLE1Q96MT3 831 aaPredicted RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MTG2Q9H4K7 406 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 RPF2Q9H7B2 306 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 IGLV3-10A0A075B6K4 115 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 PENKP01210 267 aaPredicted RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 BMPR1AP36894 532 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ETV3P41162 512 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ASMTP46597 345 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TMED10P49755 219 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 SLC16A1P53985 500 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 UBE3AQ05086 875 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 TTC29Q8NA56 475 aaPredicted RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 COL26A1Q96A83 441 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF419Q96HQ0 510 aaPredicted RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MAELQ96JY0 434 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MYRFLQ96LU7 910 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 IMP3Q9NV31 184 aaKnown RBP11.33□□□□□ -0.6
NPHP4-204ENST00000460696 MAP10Q9P2G4 905 aa11.33□□□□□ -0.6
NPHP4-204ENST00000460696 A0A0G2JN53 185 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TARM1B6A8C7 271 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 SOCS5O75159 536 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 C8BP07358 591 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 MTHFD2P13995 350 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 HTR1EP28566 365 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 PCYT1AP49585 367 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ALDH3A2P51648 485 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 PIGFQ07326 219 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TYSND1Q2T9J0 566 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 AGTRAPQ6RW13 159 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CASP12Q6UXS9 341 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 SLCO6A1Q86UG4 719 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TMEM25Q86YD3 366 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ERI1Q8IV48 349 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 DTWD1Q8N5C7 304 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 OR5K1Q8NHB7 308 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ZFAND2BQ8WV99 257 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ZHX1-C8orf76Q96EF9 292 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ZNF696Q9H7X3 374 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 OARD1Q9Y530 152 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 NPIPB15A6NHN6 443 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CACNG3O60359 315 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TFAP2AP05549 437 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 EPHX1P07099 455 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CDH12P55289 794 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 AP1S2P56377 157 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 RCAN2Q14206 197 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CTSL3PQ5NE16 218 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ERICH5Q6P6B1 374 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 C17orf64Q86WR6 236 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 SLC22A15Q8IZD6 547 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 ANKFN1Q8N957 763 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 OR5AK3PQ8NH89 298 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 NUDT8Q8WV74 236 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 UBE2E3Q969T4 207 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 KLHL25Q9H0H3 589 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 DUS2Q9NX74 493 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 VAPAQ9P0L0 249 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 RIMKLBQ9ULI2 386 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 MAGED1Q9Y5V3 778 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CFAP20Q9Y6A4 193 aaKnown RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 GPR179Q6PRD1 2367 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 TNFRSF11BO00300 401 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 BMP2P12643 396 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CST5P28325 142 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 CTSOP43234 321 aaPredicted RBP11.32□□□□□ -0.6
NPHP4-204ENST00000460696 FAM189BP81408 668 aa11.32□□□□□ -0.6
NPHP4-204ENST00000460696 GRIK2Q13002 908 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms