RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 SPATA5L1Q9BVQ7 753 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 KCNN2Q9H2S1 579 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 GPN2Q9H9Y4 310 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 TMEM138Q9NPI0 162 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 PAK1IP1Q9NWT1 392 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 AHSPQ9NZD4 102 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 SCN10AQ9Y5Y9 1956 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 GNG14A0A1W2PPG7 69 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 WASH4PA8MWX3 477 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 CAPN14A8MX76 684 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 DHRS4L1P0CG22 281 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 FGF3P11487 239 aaPredicted RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 ANXA8P13928 327 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 GM2AP17900 193 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 DGKAP23743 735 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 CORO1AP31146 461 aaKnown RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 GATMP50440 423 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 BMXP51813 675 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 RPL38P63173 70 aaKnown RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 SMAD3P84022 425 aaKnown RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 PCLAFQ15004 111 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 MS4A13Q5J8X5 152 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 AFTPHQ6ULP2 937 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 SCD5Q86SK9 330 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 TMEM17Q86X19 198 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 IZUMO1Q8IYV9 350 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 SLC37A3Q8NCC5 494 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 SLC38A4Q969I6 547 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 TRNT1Q96Q11 434 aaKnown RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 TRIT1Q9H3H1 467 aaKnown RBP6.06□□□□□ -1.44
VPS13D-202ENST00000460333 NMUR1Q9HB89 426 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 VPS51Q9UID3 782 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 TMEM98Q9Y2Y6 226 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 YIPF1Q9Y548 306 aa6.06□□□□□ -1.44
VPS13D-202ENST00000460333 PTPRZ1P23471 2315 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 RFXANKO14593 260 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TRIM3O75382 744 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ULK1O75385 1050 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ERN1O75460 977 aaKnown RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TFAP2AP05549 437 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 DNAJA1P31689 397 aaKnown RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 RORAP35398 523 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 GPR15P49685 360 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CLK3P49761 638 aaKnown RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ARSFP54793 590 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 NRLP54845 237 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CDH13P55290 713 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 DCDC1P59894 354 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TWF1Q12792 350 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CAMK1Q14012 370 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 GRM3Q14832 879 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 PIGGQ5H8A4 983 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 C6orf141Q5SZD1 244 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SULT1C3Q6IMI6 304 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 FBXL22Q6P050 247 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 OTOP3Q7RTS5 596 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ZDHHC21Q8IVQ6 265 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 HMCESQ96FZ2 354 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ZNF285Q96NJ3 590 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SEMA3CQ99985 751 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TP63Q9H3D4 680 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 DSN1Q9H410 356 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ZIM2Q9NZV7 527 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TNFRSF11BO00300 401 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ITGA10O75578 1167 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CYP7B1O75881 506 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ECDO95905 644 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 MZF1P28698 734 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 PMS2P3Q13401 168 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SELPLGQ14242 412 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 RTP2Q5QGT7 225 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CERCAMQ5T4B2 595 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 STEAP4Q687X5 459 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CHST9Q7L1S5 443 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 KRT78Q8N1N4 520 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 NETO2Q8NC67 525 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 OR13J1Q8NGT2 312 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 C11orf24Q96F05 449 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SH3YL1Q96HL8 342 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 GFM1Q96RP9 751 aaKnown RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CIPCQ9C0C6 399 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 DPAGT1Q9H3H5 408 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TOR3AQ9H497 397 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 FAM83DQ9H4H8 585 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 MRM3Q9HC36 420 aaKnown RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SMPD4Q9NXE4 827 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 ZMYM5Q9UJ78 669 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 DYRK1BQ9Y463 629 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TCAF1Q9Y4C2 921 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TRIP12Q14669 1992 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TSPAN3O60637 253 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SERPINB7O75635 380 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 LATS1O95835 1130 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 CXCL10P02778 98 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 FMO3P31513 532 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 GAD2Q05329 585 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SNAP47Q5SQN1 464 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 SLC8B1Q6J4K2 584 aa6.05□□□□□ -1.44
VPS13D-202ENST00000460333 TRIM40Q6P9F5 258 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms