RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 ZNF71Q9NQZ8 489 aaPredicted RBP17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 FAM53CQ9NYF3 392 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 SENP1Q9P0U3 644 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 FBXO5Q9UKT4 447 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 ASF1AQ9Y294 204 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 BTRCQ9Y297 605 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 PCDHGA6Q9Y5G7 932 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 PSAT1Q9Y617 370 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 PRSS21Q9Y6M0 314 aa17.43■□□□□ 0.38
SQSTM1-204ENST00000453046 BSNQ9UPA5 3926 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 C2orf74A8MZ97 194 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 H3BQF6 201 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 BTN3A3O00478 584 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 BTN3A1O00481 513 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 TERTO14746 1132 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 WISP1O95388 367 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 KLK3P07288 261 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 PPARGP37231 505 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 PLOD1Q02809 727 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 BOP1Q14137 746 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 FASTKD1Q53R41 847 aaKnown RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 RNF187Q5TA31 235 aaPredicted RBP17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 STRA8Q7Z7C7 330 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 MR1Q95460 341 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 MCMBPQ9BTE3 642 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 CLMPQ9H6B4 373 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 TBK1Q9UHD2 729 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 VPS9D1Q9Y2B5 631 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 KCNMB2Q9Y691 235 aa17.42■□□□□ 0.38
SQSTM1-204ENST00000453046 TENM4Q6N022 2769 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 PFDN6O15212 129 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 CD3EAPO15446 510 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 SNRPAP09012 282 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 FURINP09958 794 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 SPRP35270 261 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 MPP1Q00013 466 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 NAPRTQ6XQN6 538 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 SDCCAG8Q86SQ7 713 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 DENND6AQ8IWF6 608 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 OR5AR1Q8NGP9 310 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 MZB1Q8WU39 189 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 ABHD17AQ96GS6 310 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 TCF12Q99081 682 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 NRTNQ99748 197 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 GPR87Q9BY21 358 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 SLC7A5P2Q9GIP4 190 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 KLHL25Q9H0H3 589 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 ACTL8Q9H568 366 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 AKIRIN1Q9H9L7 192 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 SYTL2Q9HCH5 934 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 LATS2Q9NRM7 1088 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 INTS10Q9NVR2 710 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 MARCH4Q9P2E8 410 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 CORO1CQ9ULV4 474 aaPredicted RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 TDRKHQ9Y2W6 561 aaKnown RBP17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 ACTL7BQ9Y614 415 aa17.41■□□□□ 0.38
SQSTM1-204ENST00000453046 TMEM150CB9EJG8 249 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 MKRN2OSH3BPM6 223 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 OR1I1O60431 355 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 ST6GAL1P15907 406 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 KRT15P19012 456 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 TTPAP49638 278 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 TRABD2AQ86V40 505 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 ZC3HC1Q86WB0 502 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 TBC1D21Q8IYX1 336 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 N4BP2L2Q92802 583 aaPredicted RBP17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 ISL2Q96A47 359 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 ZBTB9Q96C00 473 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 CLIP3Q96DZ5 547 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 VPS39Q96JC1 886 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 TSSK1BQ9BXA7 367 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 ACTR10Q9NZ32 417 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 POLG2Q9UHN1 485 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 SERTAD3Q9UJW9 196 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 FARSAQ9Y285 508 aaKnown RBP17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 MAN2B2Q9Y2E5 1009 aa17.4■□□□□ 0.38
SQSTM1-204ENST00000453046 TRIM49D1C9J1S8 452 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 KDM1AO60341 852 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 FAM155BO75949 473 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 RECKO95980 971 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 CYP2A7P20853 494 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 PTPN4P29074 926 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 SHMT2P34897 504 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 CSRP3P50461 194 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 CTBP1Q13363 440 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 LACTB2Q53H82 288 aaPredicted RBP17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 ADGRF3Q8IZF5 1079 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 CYP4X1Q8N118 509 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 TRAPPC9Q96Q05 1148 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 GPR22Q99680 433 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 PITPNM3Q9BZ71 974 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 NOVA2Q9UNW9 492 aaKnown RBP17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 ICKQ9UPZ9 632 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 PIKFYVEQ9Y2I7 2098 aa17.39■□□□□ 0.37
SQSTM1-204ENST00000453046 SLC5A10A0PJK1 596 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 RFPL1O75677 317 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 PVRP15151 417 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 ACADLP28330 430 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 GABRB3P28472 473 aa17.38■□□□□ 0.37
SQSTM1-204ENST00000453046 SERPINB8P50452 374 aa17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms