RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 OVCH1Q7RTY7 1134 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 MAMDC2Q7Z304 686 aaPredicted RBP13.9□□□□□ -0.18
SDC1-204ENST00000429035 RAD51AP1Q96B01 352 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 SPSB2Q99619 263 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 CRB3Q9BUF7 120 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 FRMD8P1Q9BZ68 369 aaPredicted RBP13.9□□□□□ -0.18
SDC1-204ENST00000429035 EPS8L2Q9H6S3 715 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 CHRAC1Q9NRG0 131 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 AGPAT4Q9NRZ5 378 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 GUCA1BQ9UMX6 200 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 NOVA2Q9UNW9 492 aaKnown RBP13.9□□□□□ -0.18
SDC1-204ENST00000429035 SLC5A6Q9Y289 635 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 NTNG1Q9Y2I2 539 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 HS3ST3B1Q9Y662 390 aa13.9□□□□□ -0.18
SDC1-204ENST00000429035 HEATR5BQ9P2D3 2071 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 SOCS6O14544 535 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 NRP2O60462 931 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 CBX6O95503 412 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 C1orf105O95561 183 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 ALBP02768 609 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 PCID2Q5JVF3 399 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 AGAP7PQ5VUJ5 663 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 IGFL3Q6UXB1 125 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 Q6ZS92 163 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 GSTA5Q7RTV2 222 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 PPP4R1Q8TF05 950 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 UBE2Q2Q8WVN8 375 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 VPS50Q96JG6 964 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 AGAP4Q96P64 663 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 ACAT2Q9BWD1 397 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 YIPF2Q9BWQ6 316 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 WDR54Q9H977 334 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 MRM3Q9HC36 420 aaKnown RBP13.89□□□□□ -0.19
SDC1-204ENST00000429035 STOX2Q9P2F5 926 aaPredicted RBP13.89□□□□□ -0.19
SDC1-204ENST00000429035 NXT1Q9UKK6 140 aaKnown RBP13.89□□□□□ -0.19
SDC1-204ENST00000429035 CROCCQ5TZA2 2017 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 NOTCH2Q04721 2471 aa13.89□□□□□ -0.19
SDC1-204ENST00000429035 PRRC2CQ9Y520 2896 aaKnown RBP13.89□□□□□ -0.19
SDC1-204ENST00000429035 GOLGA8KD6RF30 607 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 GOLGA8TH3BQL2 631 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 MAP2K7O14733 419 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 CTSVO60911 334 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 SLCO2B1O94956 709 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 CLDN1O95832 211 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 LDLRP01130 860 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 MGAT1P26572 445 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 NMBRP28336 390 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 RPL22P35268 128 aaKnown RBP13.88□□□□□ -0.19
SDC1-204ENST00000429035 GCGRP47871 477 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 CDC16Q13042 620 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 KCTD19Q17RG1 926 aaPredicted RBP13.88□□□□□ -0.19
SDC1-204ENST00000429035 FAM214AQ32MH5 1076 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 WASHC2DQ5SRD0 308 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 YOD1Q5VVQ6 348 aaPredicted RBP13.88□□□□□ -0.19
SDC1-204ENST00000429035 FRMPD2BQ6IN97 320 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 CES3Q6UWW8 571 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 LINC00696Q6ZRV3 163 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 DNAJB14Q8TBM8 379 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 PEX13Q92968 403 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 MIEF2Q96C03 454 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 THOC3Q96J01 351 aaKnown RBP13.88□□□□□ -0.19
SDC1-204ENST00000429035 CABS1Q96KC9 395 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 TSGA10Q9BZW7 698 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 SEMA3GQ9NS98 782 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 ABCF3Q9NUQ8 709 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 ZC3H7BQ9UGR2 993 aaKnown RBP13.88□□□□□ -0.19
SDC1-204ENST00000429035 MRFAP1Q9Y605 127 aa13.88□□□□□ -0.19
SDC1-204ENST00000429035 HYKKA2RU49 373 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 FFAR3O14843 346 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 KPNA5O15131 536 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 GPR42O15529 346 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 NIPSNAP2O75323 286 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 MED26O95402 600 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 ACPPP15309 386 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 FBLP22087 321 aaKnown RBP13.87□□□□□ -0.19
SDC1-204ENST00000429035 CMPK1P30085 196 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 FMO4P31512 558 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 OCA2Q04671 838 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 FASTKQ14296 549 aaKnown RBP13.87□□□□□ -0.19
SDC1-204ENST00000429035 ZNF169Q14929 603 aaPredicted RBP13.87□□□□□ -0.19
SDC1-204ENST00000429035 CTSL3PQ5NE16 218 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 KIRREL2Q6UWL6 708 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 LRRC6Q86X45 466 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 OR2L3Q8NG85 312 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 MAGEC3Q8TD91 643 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 C8orf44Q96CB5 159 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 MAGEB10Q96LZ2 347 aaPredicted RBP13.87□□□□□ -0.19
SDC1-204ENST00000429035 IL22Q9GZX6 179 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 LHPPQ9H008 270 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 P2RY12Q9H244 342 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 ZNF160Q9HCG1 818 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 ZNF304Q9HCX3 659 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 SYBUQ9NX95 663 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 BFARQ9NZS9 450 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 SPATA7Q9P0W8 599 aa13.87□□□□□ -0.19
SDC1-204ENST00000429035 LOC105369274A0A096LPK9 316 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 LOC102723532A0A0G2JNH3 316 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 GOLGA6L6A8MZA4 724 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 E5RI56 91 aa13.86□□□□□ -0.19
SDC1-204ENST00000429035 VAPBO95292 243 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms