RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 MMP9P14780 707 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 RPL35AP18077 110 aaKnown RBP3.52□□□□□ -1.85
LINC01040-201ENST00000425048 SLC9A3P48764 834 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 CDH8P55286 799 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 CDH18Q13634 790 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 TAB1Q15750 504 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 TMEM64Q6YI46 380 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 PXKQ7Z7A4 578 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 ZER1Q7Z7L7 766 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 OR5T2Q8NGG2 359 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 RHOXF1Q8NHV9 184 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 DHX58Q96C10 678 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 ZIM3Q96PE6 472 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 NYXQ9GZU5 481 aa3.52□□□□□ -1.85
LINC01040-201ENST00000425048 ZNF541Q9H0D2 1346 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 SNAP91O60641 907 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 PRAMEF11O60813 436 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 MITFO75030 526 aaPredicted RBP3.51□□□□□ -1.85
LINC01040-201ENST00000425048 RB1P06400 928 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 SIRPAP78324 504 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 TMCO3Q6UWJ1 677 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 CHST9Q7L1S5 443 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 B3GALT6Q96L58 329 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 TBATAQ96M53 351 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 SEC62Q99442 399 aaKnown RBP3.51□□□□□ -1.85
LINC01040-201ENST00000425048 LPAR4Q99677 370 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 ATF6BQ99941 703 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 KIFC3Q9BVG8 833 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 MTHFD2LQ9H903 347 aaPredicted RBP3.51□□□□□ -1.85
LINC01040-201ENST00000425048 TMEM98Q9Y2Y6 226 aa3.51□□□□□ -1.85
LINC01040-201ENST00000425048 TRIM49BA6NDI0 452 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 PHF1O43189 567 aaPredicted RBP3.5□□□□□ -1.85
LINC01040-201ENST00000425048 OR10H2O60403 315 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 CLTBP09497 229 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 VPREB1P12018 145 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 TNFAIP3P21580 790 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 PTGER4P35408 488 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 IRX4P78413 519 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 TMF1P82094 1093 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 NDPQ00604 133 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 ZNF415Q09FC8 603 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 ZRSR2Q15696 482 aaKnown RBP3.5□□□□□ -1.85
LINC01040-201ENST00000425048 FAM189A2Q15884 450 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 LEKR1Q6ZMV7 388 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 IKBIPQ70UQ0 350 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 LDB1Q86U70 411 aaPredicted RBP3.5□□□□□ -1.85
LINC01040-201ENST00000425048 MTMR12Q9C0I1 747 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 HRH4Q9H3N8 390 aa3.5□□□□□ -1.85
LINC01040-201ENST00000425048 WSB2Q9NYS7 404 aaPredicted RBP3.5□□□□□ -1.85
LINC01040-201ENST00000425048 IGLV4-3A0A075B6K6 122 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 A0A1B0GVC2 190 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 CDRT15L2A8MXV6 281 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 TEX28O15482 410 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 OR2T7P0C7T2 308 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 JAK1P23458 1154 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 SOX3P41225 446 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 ARSEP51690 589 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 LMOD3Q0VAK6 560 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 OR4N5Q8IXE1 308 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 TDRD5Q8NAT2 981 aaKnown RBP3.49□□□□□ -1.85
LINC01040-201ENST00000425048 SERAC1Q96JX3 654 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 C7orf26Q96N11 449 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 SPATC1LQ9H0A9 340 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 GKN1Q9NS71 199 aa3.49□□□□□ -1.85
LINC01040-201ENST00000425048 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP3.48□□□□□ -1.85
LINC01040-201ENST00000425048 LNP1A1A4G5 178 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 ANKUB1A6NFN9 424 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 SNURFLB1AK76 121 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 LAMP2P13473 410 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 FDPSP14324 419 aaKnown RBP3.48□□□□□ -1.85
LINC01040-201ENST00000425048 ZNF177Q13360 481 aaPredicted RBP3.48□□□□□ -1.85
LINC01040-201ENST00000425048 DHX8Q14562 1220 aaKnown RBP3.48□□□□□ -1.85
LINC01040-201ENST00000425048 TDRD7Q8NHU6 1098 aaKnown RBP3.48□□□□□ -1.85
LINC01040-201ENST00000425048 SCFD2Q8WU76 684 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 WNT5BQ9H1J7 359 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 ADNPQ9H2P0 1102 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 IRAK4Q9NWZ3 460 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 LNPEPQ9UIQ6 1025 aa3.48□□□□□ -1.85
LINC01040-201ENST00000425048 ZNF644Q9H582 1327 aaPredicted RBP3.47□□□□□ -1.85
LINC01040-201ENST00000425048 ZWINTO95229 277 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 ACSL1P33121 698 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 ARL3P36405 182 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 DHODHQ02127 395 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 CXCL9Q07325 125 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 PTPN14Q15678 1187 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 SPECC1Q5M775 1068 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 C11orf63Q6NUN7 778 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 CCBE1Q6UXH8 406 aaPredicted RBP3.47□□□□□ -1.85
LINC01040-201ENST00000425048 WDTC1Q8N5D0 677 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 PCYOX1LQ8NBM8 494 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 SLC37A3Q8NCC5 494 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 CCDC34Q96HJ3 373 aa3.47□□□□□ -1.85
LINC01040-201ENST00000425048 TDRD9Q8NDG6 1382 aaKnown RBP3.47□□□□□ -1.85
LINC01040-201ENST00000425048 NPIPB9F8W1W9 429 aa3.46□□□□□ -1.86
LINC01040-201ENST00000425048 HAT1O14929 419 aa3.46□□□□□ -1.86
LINC01040-201ENST00000425048 ZNF354AO60765 605 aaPredicted RBP3.46□□□□□ -1.86
LINC01040-201ENST00000425048 MYL7Q01449 175 aa3.46□□□□□ -1.86
LINC01040-201ENST00000425048 EXT1Q16394 746 aa3.46□□□□□ -1.86
LINC01040-201ENST00000425048 CA9Q16790 459 aa3.46□□□□□ -1.86
LINC01040-201ENST00000425048 KHDRBS2Q5VWX1 349 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms