RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 MOCS2O96007 188 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 HLA-DPA1P20036 260 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PTPN6P29350 595 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 TNFSF8P32971 234 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PGFP49763 221 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PCBP2Q15366 365 aaKnown RBP eCLIP10.43□□□□□ -0.741e-12■■□□□ 13.5
USP54-204ENST00000422491 NFE2Q16621 373 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 PTPRNQ16849 979 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ARMCX4Q5H9R4 360 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 SUSD1Q6UWL2 747 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 LIX1Q8N485 282 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 ST13P5Q8NFI4 369 aaPredicted RBP10.43□□□□□ -0.74
USP54-204ENST00000422491 MYLPFQ96A32 169 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 LINGO1Q96FE5 620 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 DHRS9Q9BPW9 319 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 AMBNQ9NP70 447 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 MUTYHQ9UIF7 546 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 CFL2Q9Y281 166 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 PCDHB5Q9Y5E4 795 aa10.43□□□□□ -0.74
USP54-204ENST00000422491 A0A075B6Q4 140 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 NIPSNAP2O75323 286 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 SLC25A27O95847 323 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 VIPP01282 170 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 FABP3P05413 133 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 IL7P13232 177 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TIE1P35590 1138 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 HTR2BP41595 481 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 MLLT6P55198 1093 aaPredicted RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 ABHD18Q0P651 414 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 GPAT3Q53EU6 434 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TAPT1Q6NXT6 567 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 C19orf48Q6RUI8 117 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 Q6ZPB1 254 aaPredicted RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 SCAMP5Q8TAC9 235 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 CD200R1Q8TD46 325 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TMEM40Q8WWA1 233 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TRNT1Q96Q11 434 aaKnown RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 MCCC1Q96RQ3 725 aaPredicted RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 KCNS3Q9BQ31 491 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TTPALQ9BTX7 342 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 GON7Q9BXV9 100 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 ASAH2Q9NR71 780 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 GIMAP4Q9NUV9 329 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 SPASTQ9UBP0 616 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 PRELID1Q9Y255 219 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 MAN2B2Q9Y2E5 1009 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 V9GYH0 126 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 MICAL3Q7RTP6 2002 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 BRWD3Q6RI45 1802 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 UBL4AP11441 157 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 RPS12P25398 132 aaKnown RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 PKLRP30613 574 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 ZNF140P52738 457 aaPredicted RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 IL2P60568 153 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 SLC14A1Q13336 389 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 GTF2H2Q13888 395 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 PCBP1Q15365 356 aaKnown RBP eCLIP10.42□□□□□ -0.74
USP54-204ENST00000422491 SMU1Q2TAY7 513 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TOR1AIP1Q5JTV8 583 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 PIK3R6Q5UE93 754 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 GTF2H2CQ6P1K8 395 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 TMEM86AQ8N2M4 240 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 DNAJB8Q8NHS0 232 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 CEP19Q96LK0 163 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 C1orf74Q96LT6 269 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 COL21A1Q96P44 957 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 SEMA3CQ99985 751 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 KCNH6Q9H252 994 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 C3orf14Q9HBI5 128 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 NLE1Q9NVX2 485 aaPredicted RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 THUMPD1Q9NXG2 353 aaKnown RBP10.42□□□□□ -0.74
USP54-204ENST00000422491 NUDT4Q9NZJ9 180 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 IPPQ9Y573 584 aa10.42□□□□□ -0.74
USP54-204ENST00000422491 AOC2O75106 756 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 VPS26AO75436 327 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 NDUFS3O75489 264 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 STSP08842 583 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 PRIM2P49643 509 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 CDKN1CP49918 316 aaPredicted RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 HMGCS1Q01581 520 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 MAD2L1Q13257 205 aaPredicted RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 ZNF79Q15937 498 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 BAK1Q16611 211 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ZMAT1Q5H9K5 638 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 CTSL3PQ5NE16 218 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ARMC4Q5T2S8 1044 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 KIAA1841Q6NSI8 718 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 GPR153Q6NV75 609 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 VTCN1Q7Z7D3 282 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ZSWIM9Q86XI8 627 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ZNF683Q8IZ20 524 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 CHCHD4Q8N4Q1 142 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 EMID1Q96A84 441 aaPredicted RBP10.41□□□□□ -0.74
USP54-204ENST00000422491 ZFP42Q96MM3 310 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 INPP5KQ9BT40 448 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 TRIM62Q9BVG3 475 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ROGDIQ9GZN7 287 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 ASIC5Q9NY37 505 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 GPR83Q9NYM4 423 aa10.41□□□□□ -0.74
USP54-204ENST00000422491 STMN3Q9NZ72 180 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms