RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 NXNQ6DKJ4 435 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 LETMD1Q6P1Q0 360 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 RBM12BQ8IXT5 1001 aaKnown RBP16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 C2orf73Q8N5S3 287 aaPredicted RBP16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 PRSS33Q8NF86 280 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 KNL1Q8NG31 2342 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 OR2L8Q8NGY9 312 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 ZFPM2Q8WW38 1151 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 KCNA7Q96RP8 456 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 SGPP1Q9BX95 441 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 SLC29A3Q9BZD2 475 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 XKR8Q9H6D3 395 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 ZNF624Q9P2J8 865 aaPredicted RBP16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 SNX11Q9Y5W9 270 aa16.58■□□□□ 0.24
CCDC28B-202ENST00000421922 TMEM131Q92545 1883 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 PI4KAP42356 2102 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 LMO7DNF2Z398 122 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 EBAG9O00559 213 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 SDC3O75056 442 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 PIAS2O75928 621 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 KRT6AP02538 564 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 KRT6BP04259 564 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 KRT6CP48668 564 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 FASTKQ14296 549 aaKnown RBP16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 ZC3H14Q6PJT7 736 aaKnown RBP16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 LCTLQ6UWM7 567 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 TMPRSS11BQ86T26 416 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 C17orf64Q86WR6 236 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 ZBTB44Q8NCP5 570 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 SLC37A2Q8TED4 501 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 C19orf60Q96EN9 201 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 ELF4Q99607 663 aaPredicted RBP16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 SRMSQ9H3Y6 488 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 ELOVL6Q9H5J4 265 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 TNFRSF12AQ9NP84 129 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 TAC3Q9UHF0 121 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 SNX6Q9UNH7 406 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 ICKQ9UPZ9 632 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 TIMM22Q9Y584 194 aa16.57■□□□□ 0.24
CCDC28B-202ENST00000421922 E7EQ34 232 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 GALR2O43603 387 aaPredicted RBP16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 CCNDBP1O95273 360 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 SERPINB3P29508 390 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 IDH3AP50213 366 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 NUBP1P53384 320 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 HHEXQ03014 270 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 BTKQ06187 659 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 HIST2H2ACQ16777 129 aaPredicted RBP16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 ZXDCQ2QGD7 858 aaPredicted RBP16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 GGTA1PQ4G0N0 100 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 PAGE2BQ5JRK9 111 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 VWA5B1Q5TIE3 1220 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 LIPJQ5W064 366 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 HIST2H2AA3Q6FI13 130 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 EPGNQ6UW88 154 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 AMIGO1Q86WK6 493 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 NAGSQ8N159 534 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 SFRP1Q8N474 314 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 SLC5A11Q8WWX8 675 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 PATE1Q8WXA2 126 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 CCT7Q99832 543 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 ACAT2Q9BWD1 397 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 KCNK13Q9HB14 408 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 TCF7L2Q9NQB0 619 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 TMEM74BQ9NUR3 256 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 RIC8BQ9NVN3 520 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 OR6C2Q9NZP2 312 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 HEY2Q9UBP5 337 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 TRIM33Q9UPN9 1127 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 BTRCQ9Y297 605 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 RNF11Q9Y3C5 154 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 PCDHB11Q9Y5F2 797 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 CACNA1EQ15878 2313 aa16.56■□□□□ 0.24
CCDC28B-202ENST00000421922 USP34Q70CQ2 3546 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 GOLGA8QA0A0J9YX86 632 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 GOLGA8OA6NCC3 632 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 GOLGA8NF8WBI6 632 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 FFAR3O14843 346 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 PIP5K1BO14986 540 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 YY2O15391 372 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 YKT6O15498 198 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 GPR42O15529 346 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 VPS4BO75351 444 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 HNF4AP41235 474 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 PPM1FP49593 454 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 FOXA1P55317 472 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 UBE2IP63279 158 aaKnown RBP16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 IFT88Q13099 833 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 CPSF6Q16630 551 aaKnown RBP eCLIP16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 DEFB133Q30KQ1 61 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 SLC9B1Q4ZJI4 515 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 PEAR1Q5VY43 1037 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 IL27RAQ6UWB1 636 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 ZNF771Q7L3S4 317 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 MAVSQ7Z434 540 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 LRRC56Q8IYG6 542 aaPredicted RBP16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 LMNTD1Q8N9Z9 388 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 OR4E2Q8NGC2 313 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 HMGCLL1Q8TB92 370 aa16.55■□□□□ 0.24
CCDC28B-202ENST00000421922 REPS1Q96D71 796 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 88.8 ms