RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 NPPBP16860 134 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 JUNDP17535 347 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 GNAZP19086 355 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CD22P20273 847 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 NDUFS1P28331 727 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 C21orf59P57076 290 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 IRF8Q02556 426 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CHIT1Q13231 466 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 TSTA3Q13630 321 aaPredicted RBP6.43□□□□□ -1.38
VPS41-204ENST00000413141 UBAP2LQ14157 1087 aaKnown RBP6.43□□□□□ -1.38
VPS41-204ENST00000413141 KRT33BQ14525 404 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 KIR2DS5Q14953 304 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 ABRAXAS2Q15018 415 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 TBCCQ15814 346 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CPSF6Q16630 551 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS41-204ENST00000413141 SPRED3Q2MJR0 410 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 GALNTL6Q49A17 601 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 PRRT3Q5FWE3 981 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 XKR6Q5GH73 641 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 METTL21CQ5VZV1 264 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 LIPJQ5W064 366 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 TMEM198Q66K66 360 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 NXNQ6DKJ4 435 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 IL27RAQ6UWB1 636 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 SUSD1Q6UWL2 747 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 LCTLQ6UWM7 567 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 SLCO4C1Q6ZQN7 724 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CCDC121Q6ZUS5 278 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 LARP4Q71RC2 724 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS41-204ENST00000413141 TAF8Q7Z7C8 310 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 TMPRSS11BQ86T26 416 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 HOMEZQ8IX15 550 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 RAB42Q8N4Z0 105 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 DTWD2Q8NBA8 298 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 OR2L8Q8NGY9 312 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 OR2T11Q8NH01 316 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CEP70Q8NHQ1 597 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 HMGCLL1Q8TB92 370 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 SLC5A11Q8WWX8 675 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 SMPDL3AQ92484 453 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 USP7Q93009 1102 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 NEIL2Q969S2 332 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CXorf40BQ96DE9 158 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 WDR34Q96EX3 536 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 PTCD3Q96EY7 689 aaKnown RBP6.43□□□□□ -1.38
VPS41-204ENST00000413141 MARK4Q96L34 752 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CATSPER2Q96P56 530 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 HBEGFQ99075 208 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 MIPEPQ99797 713 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CCT7Q99832 543 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 HAUS8Q9BT25 410 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 CCDC106Q9BWC9 280 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 EHD1Q9H4M9 534 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 XKR8Q9H6D3 395 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 SAR1AQ9NR31 198 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 POT1Q9NUX5 634 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 ZNF624Q9P2J8 865 aaPredicted RBP6.43□□□□□ -1.38
VPS41-204ENST00000413141 GIMAP2Q9UG22 337 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 TAC3Q9UHF0 121 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 LNPEPQ9UIQ6 1025 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 FBXO4Q9UKT5 387 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 SLC12A4Q9UP95 1085 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 TRIM33Q9UPN9 1127 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 DYRK1BQ9Y463 629 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 KCNE2Q9Y6J6 123 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 COLEC10Q9Y6Z7 277 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 FANCMQ8IYD8 2048 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 KMT2EQ8IZD2 1858 aa6.43□□□□□ -1.38
VPS41-204ENST00000413141 USP34Q70CQ2 3546 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 A0A1B0GTW7 788 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 PIPSLA2A3N6 862 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 CAPN14A8MX76 684 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 PRR5-ARHGAP8B1AHC4 643 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 B4DGG1 531 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 H0YIV9 168 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 LSM1O15116 133 aaKnown RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 UBDO15205 165 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 GPR37L1O60883 481 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 VPS4BO75351 444 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 ULK1O75385 1050 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 PDYNP01213 254 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 KRT6AP02538 564 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 KRT6BP04259 564 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 ALDOCP09972 364 aaKnown RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 CDH1P12830 882 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 SLC2A4P14672 509 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 XRCC1P18887 633 aaPredicted RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 NCF2P19878 526 aaPredicted RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 VARSP26640 1264 aaKnown RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 PSMB5P28074 263 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 PEBP1P30086 187 aaKnown RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 SHMT2P34897 504 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 HNF4AP41235 474 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 SLC19A1P41440 591 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 CASP2P42575 452 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 KRT6CP48668 564 aa6.42□□□□□ -1.38
VPS41-204ENST00000413141 DHPSP49366 369 aaPredicted RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 CSNK1EP49674 416 aaKnown RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 UBE2IP63279 158 aaKnown RBP6.42□□□□□ -1.38
VPS41-204ENST00000413141 DMTNQ08495 405 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms