RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 NADSYN1Q6IA69 706 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ACAD10Q6JQN1 1059 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 DPY19L2P1Q6NXN4 242 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 PCGF5Q86SE9 256 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 SETD3Q86TU7 594 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 KBTBD6Q86V97 674 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 LSM14AQ8ND56 463 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 OR2T3Q8NH03 318 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 IGFBPL1Q8WX77 278 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 SYN2Q92777 582 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 SKA1Q96BD8 255 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ELP4Q96EB1 424 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 CFAP57Q96MR6 1250 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.33□□□□□ -1.4
USP40-202ENST00000409945 NUSAP1Q9BXS6 441 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 ZYG11BQ9C0D3 744 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 XPO4Q9C0E2 1151 aaKnown RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 ARRDC1-AS1Q9H2J1 176 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ZDHHC4Q9NPG8 344 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 SEMA4GQ9NTN9 838 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 C2orf42Q9NWW7 574 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 ARHGEF38Q9NXL2 777 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 AIPL1Q9NZN9 384 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 IFNKQ9P0W0 207 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 KLQ9UEF7 1012 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 VPS28Q9UK41 221 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 HPCAL4Q9UM19 191 aa6.33□□□□□ -1.4
USP40-202ENST00000409945 HEMK1Q9Y5R4 338 aaPredicted RBP6.33□□□□□ -1.4
USP40-202ENST00000409945 A0A087X1B8 175 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 EDDM13A0A1B0GTR0 161 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 SIGLEC16A6NMB1 481 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 MEI4A8MW99 385 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 EPHB6O15197 1021 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 RTN2O75298 545 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 ZNF806P0C7X5 589 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 OR1E1P30953 314 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 HOXC13P31276 330 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 CSKP41240 450 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 PRKCIP41743 596 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 ZBED6P86452 979 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 FUT11Q495W5 492 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 FAM46CQ5VWP2 391 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 ZNF776Q68DI1 518 aaPredicted RBP6.32□□□□□ -1.4
USP40-202ENST00000409945 RWDD4Q6NW29 188 aaKnown RBP6.32□□□□□ -1.4
USP40-202ENST00000409945 FBXL22Q6P050 247 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 SCYL2Q6P3W7 929 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 TMEM65Q6PI78 240 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 APTXQ7Z2E3 356 aaKnown RBP6.32□□□□□ -1.4
USP40-202ENST00000409945 MDGA2Q7Z553 956 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 TBC1D1Q86TI0 1168 aaPredicted RBP6.32□□□□□ -1.4
USP40-202ENST00000409945 CCDC112Q8NEF3 446 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 OLIG1Q8TAK6 271 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 FAM172AQ8WUF8 416 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 RXFP2Q8WXD0 754 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 NT5C3BQ969T7 300 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 PRICKLE1Q96MT3 831 aaPredicted RBP6.32□□□□□ -1.4
USP40-202ENST00000409945 HSD3B7Q9H2F3 369 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 HAUS4Q9H6D7 363 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 PIGVQ9NUD9 493 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 THAP1Q9NVV9 213 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 LCMT1Q9UIC8 334 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 ERVW-1Q9UQF0 538 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 MYRFQ9Y2G1 1151 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 MYO18AQ92614 2054 aaKnown RBP6.32□□□□□ -1.4
USP40-202ENST00000409945 SPAG17Q6Q759 2223 aa6.32□□□□□ -1.4
USP40-202ENST00000409945 VPS13AQ96RL7 3174 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 EP300Q09472 2414 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 A0A1W2PQF6 199 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 TMCO5BA8MYB1 307 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 EIF3CLB5ME19 914 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 E9PAM4 449 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 IFNL4K9M1U5 179 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 DYNC1I1O14576 645 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SERPING1P05155 500 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SKILP12757 684 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 CHRNB2P17787 502 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 CD70P32970 193 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PLK1P53350 603 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 MVDP53602 400 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 HOXA4Q00056 320 aaPredicted RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 SLC20A2Q08357 652 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 THOC5Q13769 683 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 ENPP2Q13822 863 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 HNRNPA1L2Q32P51 320 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 GLIPR1L2Q4G1C9 344 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 C2CD6Q53TS8 623 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 SLFN11Q7Z7L1 901 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 ADIPOR2Q86V24 386 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 FAM131BQ86XD5 332 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 MCOLN2Q8IZK6 566 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 DCLK2Q8N568 766 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 EMC1Q8N766 993 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PCYOX1LQ8NBM8 494 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 PIGKQ92643 395 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 DAZAP1Q96EP5 407 aaKnown RBP6.31□□□□□ -1.4
USP40-202ENST00000409945 MCEEQ96PE7 176 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 ACOX2Q99424 681 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 OMDQ99983 421 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 CNPY3Q9BT09 278 aa6.31□□□□□ -1.4
USP40-202ENST00000409945 TM2D2Q9BX73 214 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms