RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZNRF3Q9ULT6 936 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 BTRCQ9Y297 605 aa12.63□□□□□ -0.39
COL6A3-206ENST00000409809 ARHGEF28Q8N1W1 1705 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 HTRA2O43464 458 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 LAMTOR4Q0VGL1 99 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ESX1Q8N693 406 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ANKFN1Q8N957 763 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 MAPK15Q8TD08 544 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 STYXQ8WUJ0 223 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 TKTL2Q9H0I9 626 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FANCFQ9NPI8 374 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 CKMP06732 381 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 COL6A1P12109 1028 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 CLCQ05315 142 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 TARDBPQ13148 414 aaKnown RBP eCLIP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 MTMR2Q13614 643 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SEC23AQ15436 765 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 TXNRD3Q86VQ6 643 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 MOAP1Q96BY2 351 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 B3GALNT1O75752 331 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ATG12O94817 140 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FMO3P31513 532 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ATXN1P54253 815 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 GTF2H2Q13888 395 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 BAATQ14032 418 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 GTF2H2CQ6P1K8 395 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 PCDHB18PQ96TA0 734 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ERCC6L2Q5T890 1561 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 C17orf113A0A1B0GUU1 675 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FAM230AA0A1W2PPH8 454 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 E5RJQ4 531 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ADAMTS3O15072 1205 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SLC25A52Q3SY17 297 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 RALGPS1Q5JS13 557 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 CES3Q6UWW8 571 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SPARTQ8N0X7 666 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 OR13J1Q8NGT2 312 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SHKBP1Q8TBC3 707 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FKBP10Q96AY3 582 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 PRICKLE1Q96MT3 831 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SNCAIPQ9Y6H5 919 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SLC12A8A0AV02 714 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ARL5CA6NH57 179 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FLRT2O43155 660 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ZDHHC11BP0C7U3 371 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 MMP8P22894 467 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FMO1Q01740 532 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 MAD2L1BPQ15013 274 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 C14orf28Q4W4Y0 310 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 FSTL4Q6MZW2 842 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 DCLRE1AQ6PJP8 1040 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ZNF649Q9BS31 505 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 RTFDC1Q9BY42 306 aaPredicted RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 C17orf102A2RUQ5 167 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 CSF1RP07333 972 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 UBBP0CG47 229 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 UBCP0CG48 685 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 HSD17B2P37059 387 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 NR4A2P43354 598 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 RPS5P46782 204 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 RPS27AP62979 156 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 UBA52P62987 128 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 CRYBG2Q8N1P7 616 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SYNPOQ8N3V7 929 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 RRNAD1Q96FB5 475 aaKnown RBP12.62□□□□□ -0.39
COL6A3-206ENST00000409809 SNX18Q96RF0 628 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ARL5AQ9Y689 179 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 VWDEQ8N2E2 1590 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 ATG13O75143 517 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 CRY2Q49AN0 593 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 NUBP2Q9Y5Y2 271 aa12.62□□□□□ -0.39
COL6A3-206ENST00000409809 A0A1W2PPM1 405 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 NUDT19A8MXV4 375 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 E9PAM4 449 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 IRF1P10914 325 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 C12orf45Q8N5I9 185 aaPredicted RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 GALNT11Q8NCW6 608 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 GTF2BQ00403 316 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 MC2RQ01718 297 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 CRB2Q5IJ48 1285 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 FIP1L1Q6UN15 594 aaKnown RBP12.61□□□□□ -0.39
COL6A3-206ENST00000409809 EPGNQ6UW88 154 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 TPGS1Q6ZTW0 290 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 C7orf61Q8IZ16 206 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 OR8J3Q8NGG0 315 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 TMBIM1Q969X1 311 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SGK2Q9HBY8 427 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ADAMTS13Q76LX8 1427 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SCNN1GP51170 649 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 CACNG1Q06432 222 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 ARL6IP1Q15041 203 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 UGT2A3Q6UWM9 527 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 CREB3L2Q70SY1 520 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 C3orf58Q8NDZ4 430 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SLC7A13Q8TCU3 470 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 DPYSL5Q9BPU6 564 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 SC5DO75845 299 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 LATS1O95835 1130 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 C12orf40Q86WS4 652 aa12.61□□□□□ -0.39
COL6A3-206ENST00000409809 GTPBP8Q8N3Z3 284 aaPredicted RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms