RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 DNAAF2Q9NVR5 837 aaKnown RBP13.05□□□□□ -0.32
LIMS1-204ENST00000409441 PSMD13Q9UNM6 376 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 WDR37Q9Y2I8 494 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 TRAF6Q9Y4K3 522 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 COPG1Q9Y678 874 aaKnown RBP13.05□□□□□ -0.32
LIMS1-204ENST00000409441 FRYLO94915 3013 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 OTOGLQ3ZCN5 2332 aa13.05□□□□□ -0.32
LIMS1-204ENST00000409441 PCDH15Q96QU1 1955 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 PDZK1P1A8MUH7 402 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 TMEM233B4DJY2 109 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 FFAR2O15552 330 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 FOXD2O60548 495 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-204ENST00000409441 FGF4P08620 206 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 ZNF883P0CG24 379 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 GIMD1P0DJR0 217 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 KCNC1P48547 511 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 ATP4BP51164 291 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 MTTPP55157 894 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 IRX1P78414 480 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-204ENST00000409441 SUZ12Q15022 739 aaKnown RBP13.04□□□□□ -0.32
LIMS1-204ENST00000409441 TAF11Q15544 211 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 OR4D1Q15615 310 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 ABRAXAS1Q6UWZ7 409 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 WASH2PQ6VEQ5 465 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 LRRC74BQ6ZQY2 392 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 CPNE9Q8IYJ1 553 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 SLC22A15Q8IZD6 547 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 CLYBLQ8N0X4 340 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 FBXW8Q8N3Y1 598 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 PTGR2Q8N8N7 351 aaPredicted RBP13.04□□□□□ -0.32
LIMS1-204ENST00000409441 PPFIBP2Q8ND30 876 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 EEF1AKMT1Q8WVE0 214 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 PPP1R36Q96LQ0 422 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 OR52A5Q9H2C5 316 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 WASH6PQ9NQA3 447 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 PCOLCE2Q9UKZ9 415 aa13.04□□□□□ -0.32
LIMS1-204ENST00000409441 TDRD6O60522 2096 aaKnown RBP13.04□□□□□ -0.32
LIMS1-204ENST00000409441 ADAMTS9Q9P2N4 1935 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 TRBV23OR9-2A0A075B6M9 112 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 STX16-NPEPL1H3BU86 382 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 UBXN8O00124 270 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 STX16O14662 325 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 NVLO15381 856 aaKnown RBP13.03□□□□□ -0.32
LIMS1-204ENST00000409441 SKAP2O75563 359 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-204ENST00000409441 SLC35G4P0C7Q5 338 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 F3P13726 295 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 MTHFD2P13995 350 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 IL2P60568 153 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 ABRQ12979 859 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 GBX1Q14549 363 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 CLCA4Q14CN2 919 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 UAP1L1Q3KQV9 507 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 AASDHQ4L235 1098 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-204ENST00000409441 CAPRIN2Q6IMN6 1127 aaKnown RBP13.03□□□□□ -0.32
LIMS1-204ENST00000409441 IYDQ6PHW0 289 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 PGAM4Q8N0Y7 254 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 ZDHHC1Q8WTX9 485 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 EDEM2Q9BV94 578 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 C1QTNF3Q9BXJ4 246 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 EFCAB1Q9HAE3 211 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 TMEM9BQ9NQ34 198 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 SCHIP1Q9P0W5 487 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-204ENST00000409441 RNF112Q9ULX5 631 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 EP300Q09472 2414 aaPredicted RBP13.03□□□□□ -0.32
LIMS1-204ENST00000409441 PIKFYVEQ9Y2I7 2098 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 CABIN1Q9Y6J0 2220 aa13.03□□□□□ -0.32
LIMS1-204ENST00000409441 A6NCN8 305 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 UBFD1O14562 309 aaKnown RBP13.02□□□□□ -0.32
LIMS1-204ENST00000409441 KLK8O60259 260 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 CBSLP0DN79 551 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 GFAPP14136 432 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 ANPEPP15144 967 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 ACADSP16219 412 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 ATP6V1C1P21283 382 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 ACADLP28330 430 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 CBSP35520 551 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 HALP42357 657 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 RGS4P49798 205 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 NUDT2P50583 147 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 CDC16Q13042 620 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 TMEM198Q66K66 360 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 OGFOD3Q6PK18 319 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 CYHR1Q6ZMK1 362 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 DBX2Q6ZNG2 339 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 SFTPA2Q8IWL1 248 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 FBXO39Q8N4B4 442 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 EID2Q8N6I1 236 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 SKA2Q8WVK7 121 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-204ENST00000409441 GLMNQ92990 594 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 NAF1Q96HR8 494 aaKnown RBP13.02□□□□□ -0.32
LIMS1-204ENST00000409441 ZNF570Q96NI8 536 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 INSM2Q96T92 566 aaPredicted RBP13.02□□□□□ -0.32
LIMS1-204ENST00000409441 UTP6Q9NYH9 597 aaKnown RBP13.02□□□□□ -0.32
LIMS1-204ENST00000409441 NLGN3Q9NZ94 848 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 BCAP29Q9UHQ4 241 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 TSR3Q9UJK0 312 aaKnown RBP13.02□□□□□ -0.32
LIMS1-204ENST00000409441 PCDHGB2Q9Y5G2 931 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 LRP4O75096 1905 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 RALGAPA1Q6GYQ0 2036 aa13.02□□□□□ -0.32
LIMS1-204ENST00000409441 TMEM131Q92545 1883 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms