RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 SEMA4DQ92854 862 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 LINGO1Q96FE5 620 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 DYNLL2Q96FJ2 89 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 ZNF274Q96GC6 653 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 DUX5Q96PT3 197 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 NEURL2Q9BR09 285 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 C16orf70Q9BSU1 422 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 CCDC106Q9BWC9 280 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 MRPL1Q9BYD6 325 aaKnown RBP4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 DEFB129Q9H1M3 183 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 MMP27Q9H306 513 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 GOLPH3LQ9H4A5 285 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 TRPC7Q9HCX4 862 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 CRNNQ9UBG3 495 aaPredicted RBP4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 POU2F3Q9UKI9 436 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 NID2Q14112 1375 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 MYH15Q9Y2K3 1946 aa4.73□□□□□ -1.65
HMGB3P19-201ENST00000403971 SMCHD1A6NHR9 2005 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 IGKV6D-41A0A0C4DH26 115 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 TSPY2A6NKD2 308 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 IFIT3O14879 490 aaKnown RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 RANBP6O60518 1105 aaKnown RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 PRDM1O75626 825 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 HSP90AA1P07900 732 aaKnown RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 ABCB1P08183 1280 aaPredicted RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 TSPY3P0CV98 308 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 TSPY8P0CW00 308 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 GM2AP17900 193 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 UBXN2AP68543 259 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 SIRPAP78324 504 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 PRKAA1Q13131 559 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 IL11RAQ14626 422 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 RASA2Q15283 850 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 DHRS7BQ6IAN0 325 aaPredicted RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 CAPRIN2Q6IMN6 1127 aaKnown RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 SPSB3Q6PJ21 355 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 PLXDC2Q6UX71 529 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 TMEM179Q6ZVK1 233 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 DSG4Q86SJ6 1040 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 POGLUT1Q8NBL1 392 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 DCPSQ96C86 337 aaKnown RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 FAM81BQ96LP2 452 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 PKP4Q99569 1192 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 OLFM1Q99784 485 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 UBAC1Q9BSL1 405 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 POLR3CQ9BUI4 534 aaPredicted RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 DENND2DQ9H6A0 471 aaPredicted RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 RETREG1Q9H6L5 497 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 TAB2Q9NYJ8 693 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 RHCGQ9UBD6 479 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 SCN5AQ14524 2016 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 RLFQ13129 1914 aa4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 ASTN2O75129 1339 aaPredicted RBP4.72□□□□□ -1.65
HMGB3P19-201ENST00000403971 PRSS51A0A1B0GVH4 220 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CTAGE9A4FU28 777 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 ASPDHA6ND91 283 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 HEPACAM2A8MVW5 462 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 UBE2CO00762 179 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 ACOT8O14734 319 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 PFKFB2O60825 505 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CSPG5O95196 566 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 ASNSP08243 561 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CTAGE8P0CG41 777 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CALM1P0DP23 149 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CALM2P0DP24 149 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CALM3P0DP25 149 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 TOP1P11387 765 aaKnown RBP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 GJA1P17302 382 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 MATR3P43243 847 aaKnown RBP eCLIP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 PRPF4BQ13523 1007 aaKnown RBP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 ERMARDQ5T6L9 678 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 FIGLAQ6QHK4 219 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CHST3Q7LGC8 479 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 CTAGE4Q8IX94 777 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 POC1AQ8NBT0 407 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 SECISBP2LQ93073 1101 aaKnown RBP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 TCEANC2Q96MN5 208 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 SLX1AQ9BQ83 275 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 LLPHQ9BRT6 129 aaKnown RBP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 EVA1AQ9H8M9 152 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 LY9Q9HBG7 655 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 MIOSQ9NXC5 875 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 GDE1Q9NZC3 331 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 NPAP1Q9NZP6 1156 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 NYAP2Q9P242 653 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 NFKBIL1Q9UBC1 381 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 ZNF112Q9UJU3 913 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 YIPF1Q9Y548 306 aa4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 COL11A1P12107 1806 aaPredicted RBP4.71□□□□□ -1.66
HMGB3P19-201ENST00000403971 LOC285556D6RIA3 1793 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 SSC5DA1L4H1 1573 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 TEX13DA0A0J9YY54 714 aaPredicted RBP4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 KLF18A0A0U1RQI7 1052 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 A0A1B0GUV1 79 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 CCDC69A6NI79 296 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 ANKRD66B4E2M5 251 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 SSX4O60224 188 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 LIPFP07098 398 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 NF2P35240 595 aa4.7□□□□□ -1.66
HMGB3P19-201ENST00000403971 CAPZA2P47755 286 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms