RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 TCTN2Q96GX1 697 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 PDLIM5Q96HC4 596 aaKnown RBP12.87□□□□□ -0.35
VPS28-202ENST00000377348 FUT8Q9BYC5 575 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 DPH1Q9BZG8 443 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 PARVBQ9HBI1 364 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 SYTL2Q9HCH5 934 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 UTP6Q9NYH9 597 aaKnown RBP12.87□□□□□ -0.35
VPS28-202ENST00000377348 STOX2Q9P2F5 926 aaPredicted RBP12.87□□□□□ -0.35
VPS28-202ENST00000377348 TAC3Q9UHF0 121 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 PILRAQ9UKJ1 303 aa12.87□□□□□ -0.35
VPS28-202ENST00000377348 HMX2A2RU54 273 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 IQCJ-SCHIP1C9J366 451 aaPredicted RBP12.86□□□□□ -0.35
VPS28-202ENST00000377348 GUCA1CO95843 209 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 NTRK1P04629 796 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 RPA3P35244 121 aaPredicted RBP12.86□□□□□ -0.35
VPS28-202ENST00000377348 GRIA3P42263 894 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 GABRA4P48169 554 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 ARHGAP19Q14CB8 494 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 ZKSCAN8Q15776 578 aaPredicted RBP12.86□□□□□ -0.35
VPS28-202ENST00000377348 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS28-202ENST00000377348 MROH9Q5TGP6 573 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 FCRL6Q6DN72 434 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 FIGLAQ6QHK4 219 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 SBSNQ6UWP8 590 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 CACNA2D3Q8IZS8 1091 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 NKD1Q969G9 470 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 TSPAN17Q96FV3 270 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 CCDC138Q96M89 665 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 ATG10Q9H0Y0 220 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 ANKZF1Q9H8Y5 726 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 FANCEQ9HB96 536 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 POPDC3Q9HBV1 291 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 SLC6A20Q9NP91 592 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 TMEM184BQ9Y519 407 aaPredicted RBP12.86□□□□□ -0.35
VPS28-202ENST00000377348 PTPRQQ9UMZ3 2332 aa12.86□□□□□ -0.35
VPS28-202ENST00000377348 ZNF839A8K0R7 811 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 MAP3K7O43318 606 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 SCRG1O75711 98 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 HIST1H2AGP0C0S8 130 aaPredicted RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 CCDC166P0CW27 439 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 STMN1P16949 149 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 HIST1H2ADP20671 130 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 HSD17B2P37059 387 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 RAB10P61026 200 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 TBPL1P62380 186 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 ILF2Q12905 390 aaKnown RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 TSNQ15631 228 aaKnown RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 PPP1R3AQ16821 1122 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 ZXDCQ2QGD7 858 aaPredicted RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 COL28A1Q2UY09 1125 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 THEMIS2Q5TEJ8 643 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 CYB5D1Q6P9G0 228 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 AGTRAPQ6RW13 159 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 TMEM126BQ8IUX1 230 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 DNAJC22Q8N4W6 341 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 GALNT6Q8NCL4 622 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 N4BP2L2Q92802 583 aaPredicted RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 ALKBH8Q96BT7 664 aaKnown RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 MED8Q96G25 268 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 HIST1H2AHQ96KK5 128 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 FCRL4Q96PJ5 515 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 PAFAH2Q99487 392 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 HIST1H2AJQ99878 128 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 H2AFJQ9BTM1 129 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 TXLNGYQ9BZA5 131 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 SPRTNQ9H040 489 aaPredicted RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 AKIRIN1Q9H9L7 192 aaPredicted RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 CPNE5Q9HCH3 593 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 MRPS30Q9NP92 439 aaKnown RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 ARL15Q9NXU5 204 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 CTNNAL1Q9UBT7 734 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.85□□□□□ -0.35
VPS28-202ENST00000377348 V9GYY5 206 aaPredicted RBP12.85□□□□□ -0.35
VPS28-202ENST00000377348 LOC400499M0QZD8 3231 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 SPTBP11277 2137 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 NBEAQ8NFP9 2946 aa12.85□□□□□ -0.35
VPS28-202ENST00000377348 ZFYVE26Q68DK2 2539 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 A0A087WUV0 522 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 IGKV1-8A0A0C4DH67 115 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 LOC101059948A0A1B0GTJ6 334 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 POC1B-GALNT4F8VUJ3 575 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 EFSO43281 561 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 RIPK2O43353 540 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 CTSVO60911 334 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 FKBP9O95302 570 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 SLC35E2BP0CK96 405 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 WT1P19544 449 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 CMPK1P30085 196 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 ATP1A2P50993 1020 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 PMS2P54278 862 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 DLG1Q12959 904 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 NAE1Q13564 534 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 CSHL1Q14406 222 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 ICE2Q659A1 982 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 C6orf15Q6UXA7 325 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 RAPH1Q70E73 1250 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 BPHLQ86WA6 291 aaPredicted RBP12.84□□□□□ -0.35
VPS28-202ENST00000377348 NLGN4XQ8N0W4 816 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 IL22RA1Q8N6P7 574 aa12.84□□□□□ -0.35
VPS28-202ENST00000377348 SLC38A9Q8NBW4 561 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms