RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 KANSL1LA0AUZ9 987 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 SERTM1A2A2V5 107 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 BBIP1A8MTZ0 92 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 FXYD1O00168 92 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 CACNB4O00305 520 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 MAN2B1O00754 1011 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 CIB2O75838 187 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 KRT36O76013 467 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 ERGP11308 486 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 FOSL2P15408 326 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 CASP2P42575 452 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 PSME3P61289 254 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 PTGR1Q14914 329 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 IMPG1Q17R60 797 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 SMU1Q2TAY7 513 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 CATSPEREQ5SY80 951 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 C1orf146Q5VVC0 180 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 GRHL2Q6ISB3 625 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 LAYNQ6UX15 382 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 GALNT13Q8IUC8 556 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 DENND6BQ8NEG7 585 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 INSM2Q96T92 566 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 OSGEPL1Q9H4B0 414 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 C1orf109Q9NX04 203 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 NDE1Q9NXR1 346 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 ACSL5Q9ULC5 683 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 COL6A3P12111 3177 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 KRBA1A5PL33 1030 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 KLHL33A6NCF5 533 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 H0Y3Z8 333 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 H0YIV9 168 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 CLGNO14967 610 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 SEC22BO75396 215 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 IGLV3-19P01714 112 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 HOXC4P09017 264 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 SLC35G4P0C7Q5 338 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 GNAZP19086 355 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 PRPH2P23942 346 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 POLR2JP52435 117 aaKnown RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 KIAA1024LP59773 190 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 SFSWAPQ12872 951 aaKnown RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 HABP4Q5JVS0 413 aaKnown RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 HACD2Q6Y1H2 254 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 GCNT7Q6ZNI0 430 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 C2orf73Q8N5S3 287 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 RNF148Q8N7C7 305 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 ENDOVQ8N8Q3 282 aaKnown RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 RAD51AP1Q96B01 352 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 PDXPQ96GD0 296 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 C6orf106Q9H6K1 298 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 ASIC5Q9NY37 505 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 GPRC5BQ9NZH0 403 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 MOSPD1Q9UJG1 213 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 DLGAP4Q9Y2H0 992 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 TDRKHQ9Y2W6 561 aaKnown RBP13.34□□□□□ -0.27
PTPRF-202ENST00000372405 NDUFAF1Q9Y375 327 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 KCNE2Q9Y6J6 123 aa13.34□□□□□ -0.27
PTPRF-202ENST00000372405 A0A1W2PP18 115 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 PRSS38A1L453 326 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 FAM234BA2RU67 622 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 LRRC72A6NJI9 287 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 NPIPB8E9PQR5 432 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 IFRD1O00458 451 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 SEMA4FO95754 770 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 IGHV4-34P06331 123 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 XRCC1P18887 633 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 HNRNPA2B1P22626 353 aaKnown RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 KELP23276 732 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 JAK1P23458 1154 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 CCND1P24385 295 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 MSX2P35548 267 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 HNF4AP41235 474 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 DGKEP52429 567 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 TSTA3Q13630 321 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 CCNIQ14094 377 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 CLCA4Q14CN2 919 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 TLR1Q15399 786 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 USP39Q53GS9 565 aaKnown RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 PAGE3Q5JUK9 113 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 SYT13Q7L8C5 426 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 TMPRSS11BQ86T26 416 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 LIX1Q8N485 282 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 MAGEC3Q8TD91 643 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 TSPEARQ8WU66 669 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 OR1E3Q8WZA6 343 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 WDR34Q96EX3 536 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 APIPQ96GX9 242 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 MAGEB10Q96LZ2 347 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 MTERF1Q99551 399 aaKnown RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 GPATCH1Q9BRR8 931 aaKnown RBP13.33□□□□□ -0.28
PTPRF-202ENST00000372405 CAAP1Q9H8G2 361 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 LMAN1LQ9HAT1 526 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 SGK2Q9HBY8 427 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 GPSM3Q9Y4H4 160 aa13.33□□□□□ -0.28
PTPRF-202ENST00000372405 CHURC1-FNTBB4DL54 471 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 FPGTO14772 594 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 ANGPT2O15123 496 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 PSMG1O95456 288 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 BCKDHAP12694 445 aa13.32□□□□□ -0.28
PTPRF-202ENST00000372405 KCNK10P57789 538 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms