RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 TRIM42Q8IWZ5 723 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 OR52B6Q8NGF0 335 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 FLVCR1-AS1Q8TAF5 88 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 RAB3IL1Q8TBN0 382 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 PPP4R1Q8TF05 950 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 RSC1A1Q92681 617 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 SLC38A3Q99624 504 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 ACAT2Q9BWD1 397 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 RAB11FIP5Q9BXF6 653 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 NOL11Q9H8H0 719 aaKnown RBP18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 CCDC177Q9NQR7 707 aaPredicted RBP18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 ZNF225Q9UK10 706 aa18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 ASCC3Q8N3C0 2202 aaKnown RBP18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 ZFHX2Q9C0A1 2572 aaPredicted RBP18.36■□□□□ 0.53
CHMP4A-201ENST00000347519 ASXL3Q9C0F0 2248 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 RP1P56715 2156 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 LILRA5A6NI73 299 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 RHPN2P1A8MT19 583 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 TMEM114B3SHH9 223 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 GDF9O60383 454 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 LRP3O75074 770 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 H2AFYO75367 372 aaKnown RBP18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 GRK2P25098 689 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 OR1D5P58170 312 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 PPP1CAP62136 330 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 GNGT1P63211 74 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 OCRLQ01968 901 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 PERM1Q5SV97 790 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 PRAMEF13Q5VWM6 474 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 ASCL5Q7RTU5 278 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 RAB42Q8N4Z0 105 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 DCBLD1Q8N8Z6 715 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 AVL9Q8NBF6 648 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 OR10G6Q8NH81 332 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 SREK1Q8WXA9 508 aaKnown RBP18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 PRR11Q96HE9 360 aaPredicted RBP18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 CNDP1Q96KN2 507 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 CDK15Q96Q40 435 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 CAPS2Q9BXY5 557 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 STN1Q9H668 368 aaKnown RBP18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 TMEM9BQ9NQ34 198 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 OR6C2Q9NZP2 312 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 TAC3Q9UHF0 121 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 ADAM21Q9UKJ8 722 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 WDR87Q6ZQQ6 2873 aa18.35■□□□□ 0.53
CHMP4A-201ENST00000347519 ZNF839A8K0R7 811 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 B4GAT1O43505 415 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 NUDT21O43809 227 aaKnown RBP18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 KDM1AO60341 852 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 GLB1P16278 677 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 MPSTP25325 297 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 SH3BP2P78314 561 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 CDC16Q13042 620 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 TRAF3Q13114 568 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 BIRC2Q13490 618 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 RBBP7Q16576 425 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 ATG16L1Q676U5 607 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 METTL2BQ6P1Q9 378 aaKnown RBP18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 LCTLQ6UWM7 567 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 FAM47EQ6ZV65 393 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 SYVN1Q86TM6 617 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 OR2A1Q8NGT9 310 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 CCDC74AQ96AQ1 378 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 SH3KBP1Q96B97 665 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 PPM1MQ96MI6 270 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 IPPKQ9H8X2 491 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 ANGPTL3Q9Y5C1 460 aa18.34■□□□□ 0.53
CHMP4A-201ENST00000347519 CPED1A4D0V7 1026 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 OR5K3A6NET4 321 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 C4orf47A7E2U8 309 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 ISM1B1AKI9 464 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 E7EQ34 232 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 UBXN7O94888 489 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 EPB42P16452 691 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 LSP1P33241 339 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 ERVPABLB-1P60509 514 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 NR1D2Q14995 579 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 SUZ12Q15022 739 aaKnown RBP18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 THEMIS2Q5TEJ8 643 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 NKAIN2Q5VXU1 208 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 TRIM73Q86UV7 250 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 LRRC34Q8IZ02 419 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 Q8N9G6 341 aaPredicted RBP18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 AGAP11Q8TF27 550 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 SETD7Q8WTS6 366 aaKnown RBP18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 NEIL2Q969S2 332 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 ZNF317Q96PQ6 595 aaPredicted RBP18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 OR2A14Q96R47 310 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 MIPEPQ99797 713 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 LDHAL6BQ9BYZ2 381 aaPredicted RBP18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 CUEDC1Q9NWM3 386 aaPredicted RBP18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 HRASLS2Q9NWW9 162 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 ACTR10Q9NZ32 417 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 ZDHHC2Q9UIJ5 367 aa18.33■□□□□ 0.53
CHMP4A-201ENST00000347519 COL5A1P20908 1838 aaPredicted RBP18.33■□□□□ 0.52
CHMP4A-201ENST00000347519 HEATR5BQ9P2D3 2071 aa18.32■□□□□ 0.52
CHMP4A-201ENST00000347519 PIPSLA2A3N6 862 aa18.32■□□□□ 0.52
CHMP4A-201ENST00000347519 EME2A4GXA9 379 aaPredicted RBP18.32■□□□□ 0.52
CHMP4A-201ENST00000347519 FAM221BA6H8Z2 402 aa18.32■□□□□ 0.52
CHMP4A-201ENST00000347519 SH3BP5O60239 455 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms