RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 ZNF680Q8NEM1 530 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 IPMKQ8NFU5 416 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 NSUN5Q96P11 429 aaKnown RBP18.06■□□□□ 0.48
SMPD1-201ENST00000342245 NPY6RQ99463 290 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 LPIN3Q9BQK8 851 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 TBCDQ9BTW9 1192 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 TNKS2Q9H2K2 1166 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 FZD8Q9H461 694 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 SERHL2Q9H4I8 314 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 VAPAQ9P0L0 249 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 PHF11Q9UIL8 331 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 MIA3Q5JRA6 1907 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 IGKV6D-21A0A0A0MT36 114 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 MTHFD2P13995 350 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 BAATQ14032 418 aaPredicted RBP18.06■□□□□ 0.48
SMPD1-201ENST00000342245 GNA13Q14344 377 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 COL19A1Q14993 1142 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 GRK1Q15835 563 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 COL28A1Q2UY09 1125 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 ZNF789Q5FWF6 425 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 LCN1P1Q5VSP4 162 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 TMC8Q8IU68 726 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 CCDC71Q8IV32 467 aaPredicted RBP18.06■□□□□ 0.48
SMPD1-201ENST00000342245 HTATIP2Q9BUP3 242 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 C1QTNF3Q9BXJ4 246 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 GABARAPL3Q9BY60 117 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 TMEM168Q9H0V1 697 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 VNN3Q9NY84 501 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 PDP1Q9P0J1 537 aaPredicted RBP18.06■□□□□ 0.48
SMPD1-201ENST00000342245 ING4Q9UNL4 249 aa18.06■□□□□ 0.48
SMPD1-201ENST00000342245 TNFRSF21O75509 655 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 RAD17O75943 681 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 RPS17P08708 135 aaKnown RBP18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ADRA1AP35348 466 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ADRA1BP35368 520 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 SLC19A1P41440 591 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 BRCC3P46736 316 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 KCNQ1P51787 676 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 CDKN2DP55273 166 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 S100A12P80511 92 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 CSTF3Q12996 717 aaKnown RBP18.05■□□□□ 0.48
SMPD1-201ENST00000342245 CARD16Q5EG05 197 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 C10orf62Q5T681 223 aaPredicted RBP18.05■□□□□ 0.48
SMPD1-201ENST00000342245 FAM131AQ6UXB0 335 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 CILP2Q8IUL8 1156 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 FBXO39Q8N4B4 442 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ATG16L2Q8NAA4 619 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 DUSP18Q8NEJ0 188 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 SLC13A3Q8WWT9 602 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 WNT8BQ93098 351 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ATOH8Q96SQ7 321 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 SYNDIG1Q9H7V2 258 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ZNF70Q9UC06 446 aaPredicted RBP18.05■□□□□ 0.48
SMPD1-201ENST00000342245 GLS2Q9UI32 602 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 TNPO3Q9Y5L0 923 aaKnown RBP18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ITGB1P05556 798 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 STAG3L1P0CL83 205 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 FDXRP22570 491 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ALDH9A1P49189 494 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 CLCN3P51790 818 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 DBPQ10586 325 aaPredicted RBP18.05■□□□□ 0.48
SMPD1-201ENST00000342245 SEMA3AQ14563 771 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 HKDC1Q2TB90 917 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 ZMAT1Q5H9K5 638 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 FAHD1Q6P587 224 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 PAMR1Q6UXH9 720 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 C16orf62Q7Z3J2 963 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 TLK2Q86UE8 772 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 TRIM69Q86WT6 500 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 OR52K2Q8NGK3 314 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 MARC2Q969Z3 335 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 IKZF3Q9UKT9 509 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 FKBP7Q9Y680 259 aa18.05■□□□□ 0.48
SMPD1-201ENST00000342245 LINC00854A0A1B0GVQ3 168 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 M0QYT0 321 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 DFFAO00273 331 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 HCN1O60741 890 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 KERAO60938 352 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 PPM1BO75688 479 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 WDPCPO95876 746 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 IFNA7P01567 189 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 CSF3P09919 207 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 RPL17P18621 184 aaKnown RBP18.04■□□□□ 0.48
SMPD1-201ENST00000342245 RPS3P23396 243 aaKnown RBP eCLIP18.04■□□□□ 0.48
SMPD1-201ENST00000342245 PXNP49023 591 aaPredicted RBP18.04■□□□□ 0.48
SMPD1-201ENST00000342245 GTF2H3Q13889 308 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 RUNDC3AQ59EK9 446 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 FAM160B1Q5W0V3 765 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 EEF1DP3Q658K8 133 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 SAXO2Q658L1 398 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 CEP68Q76N32 757 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 NPWQ8N729 165 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 LPCAT1Q8NF37 534 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 STAG3L4Q8TBR4 150 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 CHTF18Q8WVB6 975 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 AKAP1Q92667 903 aaKnown RBP eCLIP18.04■□□□□ 0.48
SMPD1-201ENST00000342245 ZSWIM3Q96MP5 696 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 TSEN34Q9BSV6 310 aaKnown RBP18.04■□□□□ 0.48
SMPD1-201ENST00000342245 ASPNQ9BXN1 380 aa18.04■□□□□ 0.48
SMPD1-201ENST00000342245 RACGAP1Q9H0H5 632 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms