RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 HIC2Q96JB3 615 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ING2Q9H160 280 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 WDFY3Q8IZQ1 3526 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 C16orf96A6NNT2 1141 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 WASH3PC4AMC7 463 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SAP18O00422 153 aaKnown RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SGTAO43765 313 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 TLL1O43897 1013 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 NUAK1O60285 661 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 NPPAP01160 153 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ABCB1P08183 1280 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CYP2A6P11509 494 aaPredicted RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 IL7RP16871 459 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ARSFP54793 590 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 PON2Q15165 354 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 RUNDC3AQ59EK9 446 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 LRRC70Q7Z2Q7 622 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 ZDHHC13Q8IUH4 622 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 MRPL43Q8N983 215 aaKnown RBP10.05□□□□□ -0.8
LIMA1-201ENST00000341247 SH3GL3Q99963 347 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 EBF1Q9UH73 591 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 CDC14AQ9UNH5 594 aa10.05□□□□□ -0.8
LIMA1-201ENST00000341247 G3V2T6 193 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 K7ESM1 405 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 UPK1AO00322 258 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 AXIN1O15169 862 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CREG1O75629 220 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SLC16A8O95907 504 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 NTRK1P04629 796 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SHMT2P34897 504 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 POLR2IP36954 125 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 MEF2AQ02078 507 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CREMQ03060 361 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PIGFQ07326 219 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 GTF2H3Q13889 308 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 STARD3Q14849 445 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 NOXRED1Q6NXP6 359 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ZCCHC8Q6NZY4 707 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ABRAXAS1Q6UWZ7 409 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 THOC6Q86W42 341 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 MICU2Q8IYU8 434 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PACRGLQ8N7B6 248 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SDCCAG3Q96C92 435 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PANX1Q96RD7 426 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 REXO4Q9GZR2 422 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PAIP1Q9H074 479 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CERS4Q9HA82 394 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 AASSQ9UDR5 926 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 RSL24D1Q9UHA3 163 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 IL36AQ9UHA7 158 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PCDHGA11Q9Y5H2 935 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 COL6A3P12111 3177 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 IGLV3-16A0A075B6K0 115 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 HS6ST1O60243 411 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 COX7A2P14406 83 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 AQP1P29972 269 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 DOC2AQ14183 400 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 C16orf72Q14CZ0 275 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CES5AQ6NT32 575 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 BRAT1Q6PJG6 821 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CRTC3Q6UUV7 619 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ANGPTL8Q6UXH0 198 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 GALNT5Q7Z7M9 940 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 TMEM179BQ7Z7N9 219 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 TRAPPC5Q8IUR0 188 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 FRS2Q8WU20 508 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ZFAND2BQ8WV99 257 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 BADQ92934 168 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 NRTNQ99748 197 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SLC29A3Q9BZD2 475 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 POLR1BQ9H9Y6 1135 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SERHLQ9NQF3 203 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PPIL1Q9Y3C6 166 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF106Q9H2Y7 1883 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 hCG_2014768A0A024R1R8 64 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 KCNE1BA0A087WTH5 132 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 MYO1GB0I1T2 1018 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ETHE1O95571 254 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SLC6A12P48065 614 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CLCN2P51788 898 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 CLDN8P56748 225 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 AGTRAPQ6RW13 159 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 TMC5Q6UXY8 1006 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PARS2Q7L3T8 475 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 ZNF551Q7Z340 670 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 GPR141Q7Z602 305 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 SYTL1Q8IYJ3 562 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 TMEM132CQ8N3T6 1108 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 GLB1L3Q8NCI6 653 aaPredicted RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 PAPD5Q8NDF8 572 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 MRGPRX3Q96LB0 322 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 UGT2B28Q9BY64 529 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 TOR3AQ9H497 397 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 EPB41L1Q9H4G0 881 aa10.04□□□□□ -0.8
LIMA1-201ENST00000341247 KAT8Q9H7Z6 458 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 MRPS23Q9Y3D9 190 aaKnown RBP10.04□□□□□ -0.8
LIMA1-201ENST00000341247 hCG_2039718K7EN88 272 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 FGBP02675 491 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 AMD1P17707 334 aa10.03□□□□□ -0.8
LIMA1-201ENST00000341247 KIR3DL1P43629 444 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms