RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 EIF3FO00303 357 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 PIP5K1BO14986 540 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 MBTPS2O43462 519 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 DEAF1O75398 565 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 LDLRP01130 860 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 CD63P08962 238 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 NQO1P15559 274 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 ARSFP54793 590 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 HERC3Q15034 1050 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ARL13AQ5H913 290 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 RBM20Q5T481 1227 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 ZFP1Q6P2D0 407 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 POU5F2Q8N7G0 328 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 LHX3Q9UBR4 397 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ENTPD2Q9Y5L3 495 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 SRRM3A6NNA2 597 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 OR1I1O60431 355 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 TGFB1P01137 390 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 DCNP07585 359 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 MTERF1Q99551 399 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 TAPBPLQ9BX59 468 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 MS4A12Q9NXJ0 267 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 ARMCX1Q9P291 453 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 DUSP12Q9UNI6 340 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 COLQQ9Y215 455 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 RBBP6Q7Z6E9 1792 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 SAP18O00422 153 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 MAP2K7O14733 419 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 TCEA3O75764 348 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 RPSAP08865 295 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 PSME3P61289 254 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 RPS14P62263 151 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 LIPJQ5W064 366 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 LIPIQ6XZB0 460 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 KIAA2013Q8IYS2 634 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 DNAJB14Q8TBM8 379 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ZHX1-C8orf76Q96EF9 292 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 DACH2Q96NX9 599 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 TIMM29Q9BSF4 260 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 KLHL25Q9H0H3 589 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ACTL8Q9H568 366 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ZDHHC18Q9NUE0 388 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 PPIEQ9UNP9 301 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 ACTL7AQ9Y615 435 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 DUXAA6NLW8 204 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 CDC7O00311 574 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 SUV39H1O43463 412 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 FOXD2O60548 495 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 TPP2P29144 1249 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 ELOAQ14241 798 aaKnown RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 HKDC1Q2TB90 917 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 PLEKHM3Q6ZWE6 761 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 BANPQ8N9N5 519 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 RTP4Q96DX8 246 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ZSWIM3Q96MP5 696 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 XKR8Q9H6D3 395 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 HHATLQ9HCP6 504 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 SLC17A6Q9P2U8 582 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 HS3ST3A1Q9Y663 406 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 A8MUA0 341 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 OR2B3O76000 313 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 HLA-DQA2P01906 255 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 PWP1Q13610 501 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 ACSBG2Q5FVE4 666 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 TMEM74Q96NL1 305 aa9.88□□□□□ -0.83
USP54-201ENST00000339859 IFT80Q9P2H3 777 aaPredicted RBP9.88□□□□□ -0.83
USP54-201ENST00000339859 H3BN98 237 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 S1PR4O95977 384 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 RPL4P36578 427 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 CLDN2P57739 230 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PTCHD3Q3KNS1 767 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 TIFABQ6ZNK6 161 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 HSD11B1LQ7Z5J1 315 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 TMEM156Q8N614 296 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 MMABQ96EY8 250 aaPredicted RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 SIGLEC10Q96LC7 697 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 SLC22A12Q96S37 553 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 OXSMQ9NWU1 459 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 GPRC5BQ9NZH0 403 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 MARK1Q9P0L2 795 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PRKCHP24723 683 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 CD27P26842 260 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 LRRC36Q1X8D7 754 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 FAM92BQ6ZTR7 304 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 ACVR1CQ8NER5 493 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 CHFRQ96EP1 664 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PELOQ9BRX2 385 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 MANBAO00462 879 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 PAICSP22234 425 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 HOXC12P31275 282 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 KCTD19Q17RG1 926 aaPredicted RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 MANEALQ5VSG8 457 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 EIF3MQ7L2H7 374 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 C12orf40Q86WS4 652 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 FBXO30Q8TB52 745 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 TEFMQ96QE5 360 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 REXO4Q9GZR2 422 aaKnown RBP9.87□□□□□ -0.83
USP54-201ENST00000339859 EPB41L1Q9H4G0 881 aa9.87□□□□□ -0.83
USP54-201ENST00000339859 WNT16Q9UBV4 365 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms