RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 SLCO4C1Q6ZQN7 724 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 RTL4Q6ZR62 310 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 EEPD1Q7L9B9 569 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NUP54Q7Z3B4 507 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 NIPA2Q8N8Q9 360 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 STEAP2Q8NFT2 490 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TRAPPC12Q8WVT3 735 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TMEM45BQ96B21 275 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 C8orf76Q96K31 380 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 DNAJC1Q96KC8 554 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 QRFPRQ96P65 431 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TNFRSF13CQ96RJ3 184 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 DHRS9Q9BPW9 319 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PAAF1Q9BRP4 392 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 CACNG6Q9BXT2 260 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 LINC00597Q9H2U6 94 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SMOC1Q9H4F8 434 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 LRRC19Q9H756 370 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MAGEE1Q9HCI5 957 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MRS2Q9HD23 443 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 SLAMF7Q9NQ25 335 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MMP26Q9NRE1 261 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ACTR10Q9NZ32 417 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 DTLQ9NZJ0 730 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 MRPL15Q9P015 296 aaKnown RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TMEFF2Q9UIK5 374 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 GNPTGQ9UJJ9 305 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 TP53TG1Q9Y2A0 90 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 FRMD4BQ9Y2L6 1034 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PRG3Q9Y2Y8 225 aaPredicted RBP1.45□□□□□ -2.18
LINC00643-201ENST00000334389 FAM215AQ9Y5M1 114 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 PRUNE2Q8WUY3 3088 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 VWFP04275 2813 aa1.45□□□□□ -2.18
LINC00643-201ENST00000334389 ACANP16112 2415 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PIPSLA2A3N6 862 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 OR6C65A6NJZ3 312 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ISM1B1AKI9 464 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SRRM5B3KS81 715 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 CCL21O00585 134 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PDXKO00764 312 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 FCHO1O14526 889 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SLC16A5O15375 505 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 RANBP6O60518 1105 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PRAMEF11O60813 436 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 HSF2BPO75031 334 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 FAM13AO94988 1023 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 RBP4P02753 201 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SMIM10L1P0DMW3 83 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 TNFAIP3P21580 790 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 RPS3P23396 243 aaKnown RBP eCLIP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ACVR2AP27037 513 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PSMA5P28066 241 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PTPN7P35236 360 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 CD79BP40259 229 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PDLIM4P50479 330 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PAPOLAP51003 745 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 METAP1P53582 386 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ADKP55263 362 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SUMO3P55854 103 aaPredicted RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PSMC1P62191 440 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 CRYZQ08257 329 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 RIN1Q13671 783 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ITIH4Q14624 930 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SLC10A1Q14973 349 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 UAP1Q16222 522 aaPredicted RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 C3AR1Q16581 482 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 FAM182AQ5T1J6 154 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ZNF449Q6P9G9 518 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ENPP7Q6UWV6 458 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 GFRALQ6UXV0 394 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 JAZF1Q86VZ6 243 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 COMMD1Q8N668 190 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 ZNF614Q8N883 585 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 MAPK1IP1LQ8NDC0 245 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 TRIM58Q8NG06 486 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 OR4F5Q8NH21 305 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 CXorf40AQ8TE69 158 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 DVL3Q92997 716 aaPredicted RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SMIM10Q96HG1 83 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SPATA13Q96N96 652 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 TAAR6Q96RI8 345 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 NUDT16L1Q9BRJ7 211 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 UBQLN3Q9H347 655 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 CBLN4Q9NTU7 201 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SPHK1Q9NYA1 384 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 LRFN1Q9P244 771 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PISDQ9UG56 409 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 CNOT6Q9ULM6 557 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 TDRKHQ9Y2W6 561 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 AMDHD2Q9Y303 409 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 NME7Q9Y5B8 376 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 FKBP7Q9Y680 259 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 SEC23IPQ9Y6Y8 1000 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 RANBP2P49792 3224 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 PCNX2A6NKB5 2137 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 FBN1P35555 2871 aaKnown RBP1.44□□□□□ -2.18
LINC00643-201ENST00000334389 A0A0G2JNJ9 132 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 A0A0J9YY10 115 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 RHPN2P1A8MT19 583 aa1.44□□□□□ -2.18
LINC00643-201ENST00000334389 FAAHO00519 579 aa1.44□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms