RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PTRHD1Q6GMV3 140 aaKnown RBP13.1□□□□□ -0.31
SKA3-202ENST00000314759 TTC29Q8NA56 475 aaPredicted RBP13.1□□□□□ -0.31
SKA3-202ENST00000314759 ATL1Q8WXF7 558 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 TP53INP1Q96A56 240 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 APOL4Q9BPW4 351 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 BOCQ9BWV1 1114 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 EMILIN2Q9BXX0 1053 aa13.1□□□□□ -0.31
SKA3-202ENST00000314759 ZBTB20Q9HC78 741 aaPredicted RBP13.1□□□□□ -0.31
SKA3-202ENST00000314759 PRG3Q9Y2Y8 225 aaPredicted RBP13.1□□□□□ -0.31
SKA3-202ENST00000314759 OR2A25A4D2G3 310 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 EFCAB9A8MZ26 197 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 DYRK3O43781 588 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 FAM20BO75063 409 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 HOXB6P17509 224 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 KRT20P35900 424 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CACNG1Q06432 222 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 ZNF598Q86UK7 904 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 PLD3Q8IV08 490 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 LACC1Q8IV20 430 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 TMEM132CQ8N3T6 1108 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 SVOPQ8N4V2 548 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 LILRB4Q8NHJ6 448 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 ZHX1-C8orf76Q96EF9 292 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 FAM126AQ9BYI3 521 aaPredicted RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 CRISPLD1Q9H336 500 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 WWOXQ9NZC7 414 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 IL17CQ9P0M4 197 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 MAN2B2Q9Y2E5 1009 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 TMA7Q9Y2S6 64 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 NUP214P35658 2090 aaPredicted RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 hCG_2039718K7EN88 272 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 WNT9AO14904 365 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CCNDBP1O95273 360 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 S100A3P33764 101 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 ARHGDIAP52565 204 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 ARPP19P56211 112 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 MVKQ03426 396 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 FADDQ13158 208 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 PLEKHG6Q3KR16 790 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 RNF165Q6ZSG1 346 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 TSPYL5Q86VY4 417 aaPredicted RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 CLDN19Q8N6F1 224 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CELF2-AS1Q8N7Q2 184 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 DNAJB8Q8NHS0 232 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 USP7Q93009 1102 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CEP295NLQ96MC4 621 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 NTMT1Q9BV86 223 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 ACPTQ9BZG2 426 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CEP44Q9C0F1 390 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 NACA2Q9H009 215 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 PARVBQ9HBI1 364 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 TM9SF3Q9HD45 589 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 PDP1Q9P0J1 537 aaPredicted RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 SAMD4AQ9UPU9 718 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 PCDHB1Q9Y5F3 818 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 PABPN1LA6NDY0 278 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 CLDN24A6NM45 220 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 SSX4O60224 188 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 ACSL4O60488 711 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 WBP4O75554 376 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 WDR47O94967 919 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 MZF1P28698 734 aaPredicted RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 OR1G1P47890 313 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CDH4P55283 916 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 RPS14P62263 151 aaKnown RBP13.09□□□□□ -0.31
SKA3-202ENST00000314759 ABHD18Q0P651 414 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 SYT16Q17RD7 645 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 DOK6Q6PKX4 331 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 MBOAT1Q6ZNC8 495 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 GALNT10Q86SR1 603 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 SIGLEC11Q96RL6 698 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 CCNB1IP1Q9NPC3 277 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 PRSS21Q9Y6M0 314 aa13.09□□□□□ -0.31
SKA3-202ENST00000314759 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.08□□□□□ -0.32
SKA3-202ENST00000314759 RGS13O14921 159 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 EBLN1P0CF75 366 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 TACR1P25103 407 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 DNAJA1P31689 397 aaKnown RBP13.08□□□□□ -0.32
SKA3-202ENST00000314759 SGSHP51688 502 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 CLDN8P56748 225 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 VLDLRP98155 873 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 CTXN3Q4LDR2 81 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 FAM171A1Q5VUB5 890 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 LINGO4Q6UY18 593 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 AHSA2Q719I0 299 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 VTCN1Q7Z7D3 282 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 POP5Q969H6 163 aaKnown RBP13.08□□□□□ -0.32
SKA3-202ENST00000314759 ULK4Q96C45 1275 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 SEPT5Q99719 369 aaPredicted RBP13.08□□□□□ -0.32
SKA3-202ENST00000314759 C6orf62Q9GZU0 229 aaPredicted RBP13.08□□□□□ -0.32
SKA3-202ENST00000314759 CLPBQ9H078 707 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 DCSTAMPQ9H295 470 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 QPCTLQ9NXS2 382 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 GPRC5BQ9NZH0 403 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 TRPS1Q9UHF7 1281 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 PPT2Q9UMR5 302 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 SCN10AQ9Y5Y9 1956 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 H0Y626 953 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 PCDHGA12O60330 932 aa13.08□□□□□ -0.32
SKA3-202ENST00000314759 SLC25A14O95258 325 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms