RNA–Protein interactions for RNA: ENST00000273317.4

LIMD1-201, Transcript of LIM domains containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIMD1, Length 11,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-201ENST00000273317 RP2O75695 350 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 GADD45AP24522 165 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 DPYSL2Q16555 572 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 OGFOD2Q6N063 350 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 GPR153Q6NV75 609 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 SIDT2Q8NBJ9 832 aaKnown RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 PNPLA2Q96AD5 504 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 CEP295NLQ96MC4 621 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 ASPNQ9BXN1 380 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 EMC3Q9P0I2 261 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 TMEM5Q9Y2B1 443 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 SPIN1Q9Y657 262 aaPredicted RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 ESPL1Q14674 2120 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 RGPD8O14715 1765 aaPredicted RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 PI15O43692 258 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 PDYNP01213 254 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 NMBRP28336 390 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 AP2S1P53680 142 aaPredicted RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 PUS10Q3MIT2 529 aaKnown RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 LHFPL3Q86UP9 236 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 DENND6BQ8NEG7 585 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 ZMIZ2Q8NF64 920 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 SETD6Q8TBK2 473 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 STON2Q8WXE9 905 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 GATA5Q9BWX5 397 aaPredicted RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 DEC1Q9P2X7 70 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 CYTH4Q9UIA0 394 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 H1F0P07305 194 aaKnown RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 NDUFS1P28331 727 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 MPIP34949 423 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 DSC2Q02487 901 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 GBE1Q04446 702 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 MOGQ16653 247 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 TPRG1LQ5T0D9 272 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 OR4C15Q8NGM1 316 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 OR2L8Q8NGY9 312 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 PIWIL1Q96J94 861 aaKnown RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 KLF15Q9UIH9 416 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 HES2Q9Y543 173 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 ADAMTS3O15072 1205 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 GSTT2P0CG29 244 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 MSX2P35548 267 aaPredicted RBP7.81□□□□□ -1.16
LIMD1-201ENST00000273317 HSPA7P48741 367 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 PROKR2Q8NFJ6 384 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 NEUROD4Q9HD90 331 aa7.81□□□□□ -1.16
LIMD1-201ENST00000273317 COL14A1Q05707 1796 aaKnown RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ISPDA4D126 451 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 CD52P31358 61 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 CCDC86Q9H6F5 360 aaKnown RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 TM9SF3Q9HD45 589 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 BRD7Q9NPI1 651 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 MOCS1Q9NZB8 636 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 FBXW11Q9UKB1 542 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 SNX10Q9Y5X0 201 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 OR7A10O76100 309 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 RASGRP1O95267 797 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 HLA-DPB1P04440 258 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 IL7RP16871 459 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 NFKB2Q00653 900 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 SH3PXD2AQ5TCZ1 1133 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ZNF773Q6PK81 442 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ANKRD46Q86W74 232 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 OR6K6Q8NGW6 343 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 JOSD2Q8TAC2 188 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 HMCESQ96FZ2 354 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 SRMSQ9H3Y6 488 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 HPF1Q9NWY4 346 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 RDH8Q9NYR8 311 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 TBX1O43435 398 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 BCAS2O75934 225 aaPredicted RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 C4BPAP04003 597 aaKnown RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 LCN1P31025 176 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 GRIA1P42261 906 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 HCAR3P49019 387 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 SLC13A2Q13183 592 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 TMCO2Q7Z6W1 182 aaPredicted RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 UPF1Q92900 1129 aaKnown RBP eCLIP7.8□□□□□ -1.166e-7■■□□□ 14.5
LIMD1-201ENST00000273317 NTAN1Q96AB6 310 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 MKS1Q9NXB0 559 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 NR2E1Q9Y466 385 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 WASF2Q9Y6W5 498 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 H0YAE9 185 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ARL6IP5O75915 188 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 BLKP51451 505 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 CDKL4Q5MAI5 379 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 YIPF7Q8N8F6 280 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 C4orf32Q8N8J7 132 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 SLC22A18Q96BI1 424 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 LRRC58Q96CX6 371 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ZFP3Q96NJ6 502 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 POLR2J2Q9GZM3 115 aaKnown RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 NUDT15Q9NV35 164 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 FAM198AQ9UFP1 575 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 NOCTQ9UK39 431 aaKnown RBP7.8□□□□□ -1.16
LIMD1-201ENST00000273317 FBXW2Q9UKT8 454 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ZNF670-ZNF695F2Z2N8 137 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 PCDH7O60245 1069 aa7.8□□□□□ -1.16
LIMD1-201ENST00000273317 ILF3Q12906 894 aaKnown RBP eCLIP7.8□□□□□ -1.169e-7■■■■■ 30.6
LIMD1-201ENST00000273317 SLC24A5Q71RS6 500 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms