RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 SCUBE2Q9NQ36 999 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 IFT46Q9NQC8 304 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 DMAC2Q9NW81 257 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF69Q9UC07 566 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RIMS3Q9UJD0 308 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NME7Q9Y5B8 376 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 F5H5T6 163 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RAMP2O60895 175 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SLITRK3O94933 977 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CDK1P06493 297 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PSMB4P28070 264 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ETV5P41161 510 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RARRES1P49788 294 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NKX6-1P78426 367 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 BLOC1S3Q6QNY0 202 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ZNF283Q8N7M2 679 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RIT1Q92963 219 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NDC1Q9BTX1 674 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PIGMQ9H3S5 423 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 EVA1AQ9H8M9 152 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FXYD6-FXYD2A0A087WZ82 144 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 HSPA12AO43301 675 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 BANF1O75531 89 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PRH1P02810 166 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SUPT20HL2P0C7V6 817 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SOX11P35716 441 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PFKPQ01813 784 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GRM3Q14832 879 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ELP2Q6IA86 826 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LCLAT1Q6UWP7 414 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MTSS1LQ765P7 747 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 OTOP1Q7RTM1 612 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RAD51AP1Q96B01 352 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TARS2Q9BW92 718 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RNF32Q9H0A6 362 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FXYD6Q9H0Q3 95 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 C11orf16Q9NQ32 467 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SLC1A7O00341 560 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TGFB1I1O43294 461 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NPM3O75607 178 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PTPN5P54829 565 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 DLX5P56178 289 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ARPP19P56211 112 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 C19orf57Q0VDD7 668 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TOMM20Q15388 145 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GPR19Q15760 415 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CYB5RLQ6IPT4 315 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TRIM46Q7Z4K8 759 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CYP2S1Q96SQ9 504 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 C17orf62Q9BQA9 187 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ASPNQ9BXN1 380 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 COMMD4Q9H0A8 199 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TRPV4Q9HBA0 871 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 INTS6Q9UL03 887 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CYP2A6P11509 494 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 CYP4B1P13584 511 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 DGKGP49619 791 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 NDST2P52849 883 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 IRF8Q02556 426 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PCSK7Q16549 785 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SLC25A52Q3SY17 297 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 DESI1Q6ICB0 168 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LPCAT3Q6P1A2 487 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PLD5Q8N7P1 536 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 OR8J1Q8NGP2 316 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RBPMSQ93062 196 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 MUS81Q96NY9 551 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SPOCK3Q9BQ16 436 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ABCG8Q9H221 673 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SLC38A1Q9H2H9 487 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RIMKLBQ9ULI2 386 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 AGAP14A8MT82 685 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 WNT9AO14904 365 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GRAP2O75791 330 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ADAP00813 363 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 PAX6P26367 422 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 YWHAQP27348 245 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SOX9P48436 509 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ASAH1Q13510 395 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GRK1Q15835 563 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 STEAP4Q687X5 459 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 ARMC6Q6NXE6 501 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FSTL5Q8N475 847 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 STYXQ8WUJ0 223 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 KCNJ9Q92806 393 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 AP1S3Q96PC3 154 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 FBXL21Q9UKT6 434 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LRCH4O75427 683 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RAB3BP20337 219 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RPL6Q02878 288 aaKnown RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 GRB14Q14449 540 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SEC23BQ15437 767 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 SETMARQ53H47 684 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 TAPT1Q6NXT6 567 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 C3P1Q6ZMU1 363 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 RANBP3LQ86VV4 465 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-220ENST00000641603 LSMEM2Q8N112 164 aa4.57□□□□□ -1.68
SCN1A-220ENST00000641603 DNERQ8NFT8 737 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 233.9 ms