RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 POMT2Q9UKY4 750 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 ENTPD2Q9Y5L3 495 aa19.07■□□□□ 0.64
UPF3A-211ENST00000618700 UNC13CQ8NB66 2214 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 CACNA1AO00555 2505 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 A0A1W2PPV9 198 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 PIPSLA2A3N6 862 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 E7ENX8 843 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 CAPN5O15484 640 aaPredicted RBP19.06■□□□□ 0.64
UPF3A-211ENST00000618700 GUCA1CO95843 209 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 RBP1P09455 135 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 MTHFD2P13995 350 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 POLR2CP19387 275 aaPredicted RBP19.06■□□□□ 0.64
UPF3A-211ENST00000618700 PPP1CAP62136 330 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 TAP2Q03519 686 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 KIR2DS3Q14952 304 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 ZXDCQ2QGD7 858 aaPredicted RBP19.06■□□□□ 0.64
UPF3A-211ENST00000618700 AGTRAPQ6RW13 159 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 ZNF574Q6ZN55 896 aaPredicted RBP19.06■□□□□ 0.64
UPF3A-211ENST00000618700 CDHR3Q6ZTQ4 885 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 PLXDC1Q8IUK5 500 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 SLITRK4Q8IW52 837 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 TMEM151AQ8N4L1 468 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 PDPRQ8NCN5 879 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 OR4D9Q8NGE8 314 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 ATL1Q8WXF7 558 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 RHBDF1Q96CC6 855 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 RUFY1Q96T51 708 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 NUDT4Q9NZJ9 180 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 TMEM216Q9P0N5 145 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 SENP1Q9P0U3 644 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 PDP2Q9P2J9 529 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 XPR1Q9UBH6 696 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 DCDC2Q9UHG0 476 aa19.06■□□□□ 0.64
UPF3A-211ENST00000618700 GSAPA4D1B5 854 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 SYCE1LA8MT33 242 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 C2orf74A8MZ97 194 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 MAP2K7O14733 419 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 GLRA3O75311 464 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 SASH3O75995 380 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ANXA5P08758 320 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 MYZAPP0CAP1 466 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 HNMTP50135 292 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 PRKAA1Q13131 559 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ARMC6Q6NXE6 501 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 TMEM71Q6P5X7 295 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 RBM44Q6ZP01 1051 aaKnown RBP19.05■□□□□ 0.64
UPF3A-211ENST00000618700 TAX1BP1Q86VP1 789 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 SYTL1Q8IYJ3 562 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 C2orf73Q8N5S3 287 aaPredicted RBP19.05■□□□□ 0.64
UPF3A-211ENST00000618700 BANPQ8N9N5 519 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 PPFIBP2Q8ND30 876 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ADAMTS14Q8WXS8 1223 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 SMPDL3AQ92484 453 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ZBTB9Q96C00 473 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ZDHHC12Q96GR4 267 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 APOPT1Q96IL0 206 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 OR2A14Q96R47 310 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 CD180Q99467 661 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 MRPL57Q9BQC6 102 aaKnown RBP19.05■□□□□ 0.64
UPF3A-211ENST00000618700 MRPL46Q9H2W6 279 aaKnown RBP19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ZNF446Q9NWS9 450 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 ANKRD12Q6UB98 2062 aa19.05■□□□□ 0.64
UPF3A-211ENST00000618700 TARM1B6A8C7 271 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 UBXN8O00124 270 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 TK2O00142 265 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 SBK3P0C264 359 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 THRAP10827 490 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 UGT2B7P16662 529 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 CRHR1P34998 444 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 PPM1FP49593 454 aaPredicted RBP19.04■□□□□ 0.64
UPF3A-211ENST00000618700 CLDN6P56747 220 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 TBPL1P62380 186 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 LSM11P83369 360 aaKnown RBP eCLIP19.04■□□□□ 0.64
UPF3A-211ENST00000618700 HES3Q5TGS1 186 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 IRGCQ6NXR0 463 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 SPESP1Q6UW49 350 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 KLHDC8AQ8IYD2 350 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 OR56A3Q8NH54 315 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 EXT2Q93063 718 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 SLC22A18Q96BI1 424 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 SCYL1Q96KG9 808 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 TGM7Q96PF1 710 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 EGFL8Q99944 293 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 SGPP1Q9BX95 441 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 PITPNM3Q9BZ71 974 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 ZMYND15Q9H091 742 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 CENPHQ9H3R5 247 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 TMBIM4Q9HC24 238 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 SEMA5BQ9P283 1151 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 EMCNQ9ULC0 261 aa19.04■□□□□ 0.64
UPF3A-211ENST00000618700 IGHV5-10-1A0A0J9YXX1 117 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 NCF1BA6NI72 391 aaPredicted RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 NCF1CA8MVU1 366 aaPredicted RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SUPT3HB4E1H0 165 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 COPEO14579 308 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 KLK8O60259 260 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 SUPT3HO75486 399 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 MT-CO3P00414 261 aa19.03■□□□□ 0.64
UPF3A-211ENST00000618700 NCF1P14598 390 aaPredicted RBP19.03■□□□□ 0.64
UPF3A-211ENST00000618700 CREB1P16220 341 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms