RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 BMP4P12644 408 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 CYP2A7P20853 494 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 RRM2P31350 389 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 GJA5P36382 358 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 KCNJ8Q15842 424 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 PDZK1Q5T2W1 519 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 DHRS4L2Q6PKH6 230 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 CERS6Q6ZMG9 384 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ANKS3Q6ZW76 656 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 C11orf96Q7Z7L8 435 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 RBM23Q86U06 439 aaKnown RBP12.29□□□□□ -0.44
LIG1-221ENST00000613670 PTRH1Q86Y79 214 aaKnown RBP12.29□□□□□ -0.44
LIG1-221ENST00000613670 CADM3Q8N126 398 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 BPIFB1Q8TDL5 484 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 PHF10Q8WUB8 498 aaKnown RBP12.29□□□□□ -0.44
LIG1-221ENST00000613670 TCF25Q9BQ70 676 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 RTP3Q9BQQ7 232 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ITPAQ9BY32 194 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ATP13A3Q9H7F0 1226 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ZNF221Q9UK13 617 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 RNF6Q9Y252 685 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ZNF831Q5JPB2 1677 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 OR56A5P0C7T3 313 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 TGFBR1P36897 503 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ALDH9A1P49189 494 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 PHKG1Q16816 387 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 POM121L1PQ3SYA9 428 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ZFP69Q49AA0 526 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 PTCHD4Q6ZW05 846 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ZNF467Q7Z7K2 595 aaPredicted RBP12.29□□□□□ -0.44
LIG1-221ENST00000613670 CYP4Z1Q86W10 505 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 KLHDC9Q8NEP7 349 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 YIPF2Q9BWQ6 316 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 CD84Q9UIB8 345 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 TEKT2Q9UIF3 430 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 A0A0U1RQF3 1178 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 TCRBV5S2A0A599 114 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 SAGE2PA6NJ88 616 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 RPLP0P05388 317 aaKnown RBP12.29□□□□□ -0.44
LIG1-221ENST00000613670 FPR1P21462 350 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 OR1E2P47887 323 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ZXDBP98169 803 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 ABHD18Q0P651 414 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 GRSF1Q12849 480 aaKnown RBP eCLIP12.29□□□□□ -0.44
LIG1-221ENST00000613670 GRB14Q14449 540 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 KIAA1614Q5VZ46 1190 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 TRIM69Q86WT6 500 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 GTF2H4Q92759 462 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 PSKH2Q96QS6 385 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 CNPPD1Q9BV87 410 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.29□□□□□ -0.44
LIG1-221ENST00000613670 SLC22A14Q9Y267 594 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 KLHL20Q9Y2M5 609 aa12.29□□□□□ -0.44
LIG1-221ENST00000613670 E2F3O00716 465 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 TMCC2O75069 709 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 CLDN7O95471 211 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 DNTTP04053 509 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 TCEA1P23193 301 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 OR1D2P34982 312 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 HK3P52790 923 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 CDH4P55283 916 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 CDC42P60953 191 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 PURAQ00577 322 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 ADPRMQ3LIE5 342 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 Q6ZPB1 254 aaPredicted RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 CAMKK1Q8N5S9 505 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 PRRG3Q9BZD7 231 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 ZBTB20Q9HC78 741 aaPredicted RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 DYRK4Q9NR20 520 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 DHRS7Q9Y394 339 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 SMIM30A4D0T7 59 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 MYADML2A6NDP7 307 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 CACNG3O60359 315 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 CCNDBP1O95273 360 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 MMP2P08253 660 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 PABPC1P11940 636 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 KRT20P35900 424 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 ALDH7A1P49419 539 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 GSTM4Q03013 218 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 SMARCB1Q12824 385 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 GANABQ14697 944 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 CPTPQ5TA50 214 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 PRSS55Q6UWB4 352 aaPredicted RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 EIF3MQ7L2H7 374 aaKnown RBP12.28□□□□□ -0.44
LIG1-221ENST00000613670 GPR65Q8IYL9 337 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 EGLN2Q96KS0 407 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 Q96MT0 163 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 IL4I1Q96RQ9 567 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 ABCB9Q9NP78 766 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 TOR4AQ9NXH8 423 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 SLC13A4Q9UKG4 626 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 ASPDHA6ND91 283 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 M0R129 80 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 ITIH1P19827 911 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 TNFRSF1BP20333 461 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 CHRNA6Q15825 494 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 TIMM50Q3ZCQ8 353 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 DGKKQ5KSL6 1271 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 RRM2BQ7LG56 351 aa12.28□□□□□ -0.44
LIG1-221ENST00000613670 SH3KBP1Q96B97 665 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms