RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 GBP7Q8N8V2 638 aaPredicted RBP13.83□□□□□ -0.2
USP39-220ENST00000613444 L3MBTL4Q8NA19 623 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 METTL6Q8TCB7 284 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 CCDC106Q9BWC9 280 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 ZNF385DQ9H6B1 395 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 IMP3Q9NV31 184 aaKnown RBP13.83□□□□□ -0.2
USP39-220ENST00000613444 ARMCX1Q9P291 453 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 BTRCQ9Y297 605 aa13.83□□□□□ -0.2
USP39-220ENST00000613444 TDRKHQ9Y2W6 561 aaKnown RBP13.83□□□□□ -0.2
USP39-220ENST00000613444 ATP6AP2A0A1C7CYW4 349 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 MEI4A8MW99 385 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CCDC22O60826 627 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CRCPO75575 148 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 ATP6AP2O75787 350 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CLDN9O95484 217 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 MTHFD1P11586 935 aaKnown RBP13.82□□□□□ -0.2
USP39-220ENST00000613444 HGFP14210 728 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 NPPBP16860 134 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CD22P20273 847 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 ACTR1BP42025 376 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 ACTR1AP61163 376 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 BNIP1Q12981 228 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 UBAP2LQ14157 1087 aaKnown RBP13.82□□□□□ -0.2
USP39-220ENST00000613444 ARHGAP19Q14CB8 494 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 LACTB2Q53H82 288 aaPredicted RBP13.82□□□□□ -0.2
USP39-220ENST00000613444 TMEM198Q66K66 360 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CHSY3Q70JA7 882 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 PARGQ86W56 976 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 TREML1Q86YW5 311 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CEP70Q8NHQ1 597 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 FERD3LQ96RJ6 166 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 ZNF624Q9P2J8 865 aaPredicted RBP13.82□□□□□ -0.2
USP39-220ENST00000613444 SH2B3Q9UQQ2 575 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CACNA1EQ15878 2313 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 VPS13AQ96RL7 3174 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 TMEM221A6NGB7 291 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 E7EQ34 232 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 M0R296 226 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 MAP3K13O43283 966 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CELA2BP08218 269 aaPredicted RBP13.82□□□□□ -0.2
USP39-220ENST00000613444 LINC00032P0C843 101 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 T-ENOLP0DO92 83 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CAPN13Q6MZZ7 669 aaPredicted RBP13.82□□□□□ -0.2
USP39-220ENST00000613444 RNF165Q6ZSG1 346 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CCDC121Q6ZUS5 278 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 WDR5BQ86VZ2 330 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 OR2T11Q8NH01 316 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 CAMK1GQ96NX5 476 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 MVB12BQ9H7P6 319 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 AKTIPQ9H8T0 292 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 ACTR8Q9H981 624 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 SPATA7Q9P0W8 599 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 POLG2Q9UHN1 485 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 PI4KAP42356 2102 aa13.82□□□□□ -0.2
USP39-220ENST00000613444 TLR4O00206 839 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 PRR35P0CG20 571 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 ARL1P40616 181 aaPredicted RBP13.81□□□□□ -0.2
USP39-220ENST00000613444 ABRAXAS2Q15018 415 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 SCIMPQ6UWF3 145 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 SUSD1Q6UWL2 747 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 Q6ZSR9 355 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 EFL1Q7Z2Z2 1120 aaKnown RBP13.81□□□□□ -0.2
USP39-220ENST00000613444 DDIASQ8IXT1 998 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 PHACTR4Q8IZ21 702 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 TMEM105Q8N8V8 129 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 LINC01555Q8NAE3 123 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 USP7Q93009 1102 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 NEIL2Q969S2 332 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 SLC29A3Q9BZD2 475 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 MIR1-1HGQ9H1L0 117 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 SLC12A4Q9UP95 1085 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 CCL27Q9Y4X3 112 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 A0A1W2PPV9 198 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 FFAR3O14843 346 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 GPR42O15529 346 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 UGDHO60701 494 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 F3P13726 295 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 HSD17B2P37059 387 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 CASP2P42575 452 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 ILF3Q12906 894 aaKnown RBP eCLIP13.81□□□□□ -0.25e-9■■■■■ 33.1
USP39-220ENST00000613444 CHIT1Q13231 466 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 NXNQ6DKJ4 435 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 C1orf210Q8IVY1 113 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 CCDC177Q9NQR7 707 aaPredicted RBP13.81□□□□□ -0.2
USP39-220ENST00000613444 FARSBQ9NSD9 589 aaKnown RBP13.81□□□□□ -0.2
USP39-220ENST00000613444 GPRC5BQ9NZH0 403 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 GIMAP2Q9UG22 337 aa13.81□□□□□ -0.2
USP39-220ENST00000613444 TMEM131Q92545 1883 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 WDFY4Q6ZS81 3184 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 PRR5-ARHGAP8B1AHC4 643 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 LAMTOR5O43504 91 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 CHEK2O96017 543 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 CSF2P04141 144 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 NME1P15531 152 aaKnown RBP13.8□□□□□ -0.2
USP39-220ENST00000613444 NCF2P19878 526 aaPredicted RBP13.8□□□□□ -0.2
USP39-220ENST00000613444 HMOX2P30519 316 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 SLC19A1P41440 591 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 HALP42357 657 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 DOC2AQ14183 400 aa13.8□□□□□ -0.2
USP39-220ENST00000613444 KRT72Q14CN4 511 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms