RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 PRR30Q53SZ7 412 aaPredicted RBP7.31□□□□□ -1.24
CUX1-219ENST00000606749 ZC3H12BQ5HYM0 836 aaKnown RBP7.31□□□□□ -1.24
CUX1-219ENST00000606749 YOD1Q5VVQ6 348 aaPredicted RBP7.31□□□□□ -1.24
CUX1-219ENST00000606749 LRRC8BQ6P9F7 803 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 TTC23LQ6PF05 361 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 IGFL3Q6UXB1 125 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 ZNF662Q6ZS27 426 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 TTLL10Q6ZVT0 673 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 GSTA5Q7RTV2 222 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 OTOAQ7RTW8 1153 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 OVCH1Q7RTY7 1134 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 PPP1R32Q7Z5V6 425 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 TAX1BP1Q86VP1 789 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 LRRC6Q86X45 466 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 MPP5Q8N3R9 675 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 GALNT16Q8N428 558 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 CLEC1AQ8NC01 280 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 GSDMBQ8TAX9 411 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 DENND1AQ8TEH3 1009 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 RAD51AP1Q96B01 352 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 NACC2Q96BF6 587 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 SNRNP40Q96DI7 357 aaKnown RBP7.31□□□□□ -1.24
CUX1-219ENST00000606749 C19orf60Q96EN9 201 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 MFSD3Q96ES6 412 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 ZNF285Q96NJ3 590 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 BIRC8Q96P09 236 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 PANX3Q96QZ0 392 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 RAB11FIP5Q9BXF6 653 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 ZNF552Q9H707 407 aaPredicted RBP7.31□□□□□ -1.24
CUX1-219ENST00000606749 ATP13A2Q9NQ11 1180 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 INTS7Q9NVH2 962 aaKnown RBP7.31□□□□□ -1.24
CUX1-219ENST00000606749 BFARQ9NZS9 450 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 GNPTGQ9UJJ9 305 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 B3GNT3Q9Y2A9 372 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 NFS1Q9Y697 457 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 FER1L5A0AVI2 2057 aa7.31□□□□□ -1.24
CUX1-219ENST00000606749 SNRNP200O75643 2136 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 A0A1W2PPV9 198 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 TCRBV7S3A2A0A539 114 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FITM1A5D6W6 292 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 KRT87PA6NCN2 255 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 GOLGA6L6A8MZA4 724 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 GOLGA8KD6RF30 607 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 GOLGA8TH3BQL2 631 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 DSCR3O14972 297 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 KLHL41O60662 606 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SRPX2O60687 465 aaPredicted RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 CTSVO60911 334 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SEMA7AO75326 666 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 IPO13O94829 963 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 AGFG2O95081 481 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 VAPBO95292 243 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MATN4O95460 622 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FGGP02679 453 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 ALPPP05187 535 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MMP11P24347 488 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MCM3P25205 808 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MGAT1P26572 445 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 PSMB5P28074 263 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FMO4P31512 558 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 OR1D4P47884 311 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 EIF3BP55884 814 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 CDK16Q00536 496 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 AIMP2Q13155 320 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 MRPL49Q13405 166 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 GBX1Q14549 363 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 GRM7Q14831 915 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 NKG7Q16617 165 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 CYP2A13Q16696 494 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 KCTD19Q17RG1 926 aaPredicted RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 EIF2S3LQ2VIR3 472 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 FAM214AQ32MH5 1076 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 CRB2Q5IJ48 1285 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 TCTE1Q5JU00 501 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 CTSL3PQ5NE16 218 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 WASHC2DQ5SRD0 308 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MRNIPQ6NTE8 343 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FBXO42Q6P3S6 717 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 CES3Q6UWW8 571 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 COX15Q7KZN9 410 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SDCCAG8Q86SQ7 713 aaPredicted RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 CISD2Q8N5K1 135 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 OR2L3Q8NG85 312 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 OR2A1Q8NGT9 310 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 HMGCLL1Q8TB92 370 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MAGEC3Q8TD91 643 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SKA2Q8WVK7 121 aaPredicted RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 MAIP1Q8WWC4 291 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FKBP10Q96AY3 582 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 FOPNLQ96NB1 174 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 TCF12Q99081 682 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SELENOSQ9BQE4 189 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 SLC26A1Q9H2B4 701 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 WDR54Q9H977 334 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 MRM3Q9HC36 420 aaKnown RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 ZBTB20Q9HC78 741 aaPredicted RBP7.3□□□□□ -1.24
CUX1-219ENST00000606749 LZTFL1Q9NQ48 299 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 HOMER3Q9NSC5 361 aa7.3□□□□□ -1.24
CUX1-219ENST00000606749 CUTCQ9NTM9 273 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms