RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PIP4P1Q86T03 277 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 C10orf107Q8IVU9 208 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 ARFGAP2Q8N6H7 521 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 MDM1Q8TC05 714 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 CCDC74AQ96AQ1 378 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 CDC6Q99741 560 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 TMEM79Q9BSE2 394 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 SGPP1Q9BX95 441 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 ATG10Q9H0Y0 220 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 FAM53CQ9NYF3 392 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 KCNK4Q9NYG8 393 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 ENTPD2Q9Y5L3 495 aa13.89□□□□□ -0.19
UPF1-211ENST00000600868 IGHV1OR21-1A0A087WYE8 117 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 CPED1A4D0V7 1026 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 OR6C74A6NCV1 312 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 OR5K3A6NET4 321 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 BTN3A3O00478 584 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 B4GAT1O43505 415 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 PRICKLE3O43900 615 aaPredicted RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 GFRA3O60609 400 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 TRIM13O60858 407 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 PROS1P07225 676 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 CHRM5P08912 532 aaPredicted RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 CHN1P15882 459 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 AMD1P17707 334 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 KCNA4P22459 653 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 EEF1DP29692 281 aaKnown RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 ALDH4A1P30038 563 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 HSPA7P48741 367 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 OR1D5P58170 312 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 NAA20P61599 178 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 TBPL1P62380 186 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 HERVK_113P63132 956 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 KIR2DS3Q14952 304 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 C18orf21Q32NC0 220 aaPredicted RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 PERM1Q5SV97 790 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 CAPN13Q6MZZ7 669 aaPredicted RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 LRRC70Q7Z2Q7 622 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 SPRED1Q7Z699 444 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 OOSP2Q86WS3 158 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 NUDCD3Q8IVD9 361 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 PPFIBP2Q8ND30 876 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 OR10G6Q8NH81 332 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 IFI44Q8TCB0 444 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 MGARPQ8TDB4 240 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 SREK1Q8WXA9 508 aaKnown RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 SLC22A18Q96BI1 424 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 L3HYPDHQ96EM0 354 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 MECRQ9BV79 373 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 ERVK-6Q9BXR3 956 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 PCBD2Q9H0N5 130 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 SLC32A1Q9H598 525 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 MLXIPLQ9NP71 852 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 CCDC177Q9NQR7 707 aaPredicted RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 INTS7Q9NVH2 962 aaKnown RBP13.88□□□□□ -0.19
UPF1-211ENST00000600868 HRASLS2Q9NWW9 162 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 OGFRQ9NZT2 677 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 ZNF292O60281 2723 aa13.88□□□□□ -0.19
UPF1-211ENST00000600868 A0A1W2PPV9 198 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 PIPSLA2A3N6 862 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 K7EPI3 171 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 MATN2O00339 956 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 TNFSF14O43557 240 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 WDR47O94967 919 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 SIX3O95343 332 aaPredicted RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 GP1BAP07359 652 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 RPS17P08708 135 aaKnown RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 TYRP1P17643 537 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 OAS2P29728 719 aaKnown RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 GDF5P43026 501 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 CAPZBP47756 277 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 PRKAA1Q13131 559 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 SQSTM1Q13501 440 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 FBXO48Q5FWF7 155 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 ZNF678Q5SXM1 525 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 SUSD1Q6UWL2 747 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 LCTLQ6UWM7 567 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 THOC6Q86W42 341 aaKnown RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 C2orf73Q8N5S3 287 aaPredicted RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 LMNTD1Q8N9Z9 388 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 FAM76AQ8TAV0 307 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 NETO1Q8TDF5 533 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 ESAMQ96AP7 390 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 PYCR2Q96C36 320 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 MED8Q96G25 268 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 TMEM237Q96Q45 408 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 MIPEPQ99797 713 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 PAIP2Q9BPZ3 127 aaKnown RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 CCDC3Q9BQI4 270 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 RAB33BQ9H082 229 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 INTS9Q9NV88 658 aaKnown RBP13.87□□□□□ -0.19
UPF1-211ENST00000600868 DNAJC11Q9NVH1 559 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 SPHK1Q9NYA1 384 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 ACTR10Q9NZ32 417 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 OPTCQ9UBM4 332 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 EPHA6Q9UF33 1036 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 SLC22A14Q9Y267 594 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 ASB1Q9Y576 335 aa13.87□□□□□ -0.19
UPF1-211ENST00000600868 PCDHB11Q9Y5F2 797 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms