RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 HMGCLL1Q8TB92 370 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 NKD1Q969G9 470 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 ZNF501Q96CX3 271 aaPredicted RBP14.67□□□□□ -0.06
LIG1-219ENST00000600055 FMO2Q99518 471 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 CPNE1Q99829 537 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 ULBP3Q9BZM4 244 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 L2HGDHQ9H9P8 463 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 CAB39LQ9H9S4 337 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 LNPEPQ9UIQ6 1025 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 IKZF3Q9UKT9 509 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 SSUH2Q9Y2M2 353 aa14.67□□□□□ -0.06
LIG1-219ENST00000600055 TMEM184BQ9Y519 407 aaPredicted RBP14.67□□□□□ -0.06
LIG1-219ENST00000600055 TMEM150CB9EJG8 249 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 EFSO43281 561 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 ZBTB14O43829 449 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 DLGAP3O95886 979 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 SLC16A8O95907 504 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 MAGP20916 626 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 MAP4P27816 1152 aaKnown RBP14.66□□□□□ -0.06
LIG1-219ENST00000600055 OAS2P29728 719 aaKnown RBP14.66□□□□□ -0.06
LIG1-219ENST00000600055 STX2P32856 288 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 GP5P40197 560 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 PNLIPRP1P54315 467 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 YBX1P67809 324 aaKnown RBP14.66□□□□□ -0.06
LIG1-219ENST00000600055 TSTA3Q13630 321 aaPredicted RBP14.66□□□□□ -0.06
LIG1-219ENST00000600055 SF1Q15637 639 aaKnown RBP14.66□□□□□ -0.06
LIG1-219ENST00000600055 PHKG1Q16816 387 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.66□□□□□ -0.06
LIG1-219ENST00000600055 KIAA1614Q5VZ46 1190 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 LRRC8EQ6NSJ5 796 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 MBOAT1Q6ZNC8 495 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 CACNA2D3Q8IZS8 1091 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 OR1L3Q8NH93 324 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 ZNF480Q8WV37 535 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 SLC22A18Q96BI1 424 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 RBBP8Q99708 897 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 MIPEPQ99797 713 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 FAM129AQ9BZQ8 928 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 CPNE5Q9HCH3 593 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.66□□□□□ -0.06
LIG1-219ENST00000600055 TXNDC16Q9P2K2 825 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 NFU1Q9UMS0 254 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 PDE10AQ9Y233 779 aa14.66□□□□□ -0.06
LIG1-219ENST00000600055 ACACAQ13085 2346 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 NTRK1P04629 796 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 C8GP07360 202 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 CTSBP07858 339 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 WT1P19544 449 aaPredicted RBP14.65□□□□□ -0.06
LIG1-219ENST00000600055 GABRA4P48169 554 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 COL9A2Q14055 689 aaPredicted RBP14.65□□□□□ -0.06
LIG1-219ENST00000600055 BROXQ5VW32 411 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 FCRL6Q6DN72 434 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 RELL1Q8IUW5 271 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 NLGN4XQ8N0W4 816 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 GALNT6Q8NCL4 622 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 NLGN4YQ8NFZ3 816 aaPredicted RBP14.65□□□□□ -0.06
LIG1-219ENST00000600055 OR2A1Q8NGT9 310 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 ANKRD49Q8WVL7 239 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 MRRFQ96E11 262 aaKnown RBP14.65□□□□□ -0.06
LIG1-219ENST00000600055 TCTN2Q96GX1 697 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 CCNL2Q96S94 520 aaPredicted RBP14.65□□□□□ -0.06
LIG1-219ENST00000600055 ACAT2Q9BWD1 397 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 SLC12A9Q9BXP2 914 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 CDC42EP4Q9H3Q1 356 aaKnown RBP14.65□□□□□ -0.06
LIG1-219ENST00000600055 ABCF3Q9NUQ8 709 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 SDK2Q58EX2 2172 aa14.65□□□□□ -0.06
LIG1-219ENST00000600055 LOC101059948A0A1B0GTJ6 334 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 E7ENX8 843 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 SLC16A5O15375 505 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 PHGDHO43175 533 aaKnown RBP14.64□□□□□ -0.07
LIG1-219ENST00000600055 MAP3K7O43318 606 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 NRP2O60462 931 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 ACSL3O95573 720 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 ZNF37AP17032 561 aaPredicted RBP14.64□□□□□ -0.07
LIG1-219ENST00000600055 CYP2A7P20853 494 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 IMPA1P29218 277 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 GRIA3P42263 894 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 ATP1A2P50993 1020 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 CXADRP78310 365 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 POU4F1Q01851 419 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 TAP2Q03519 686 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 SP140Q13342 867 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 USP10Q14694 798 aaKnown RBP14.64□□□□□ -0.07
LIG1-219ENST00000600055 ARHGAP19Q14CB8 494 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 MANEAQ5SRI9 462 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 GRTP1Q5TC63 336 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 CYB5D1Q6P9G0 228 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 FIGLAQ6QHK4 219 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 C6orf15Q6UXA7 325 aaPredicted RBP14.64□□□□□ -0.07
LIG1-219ENST00000600055 BPHLQ86WA6 291 aaPredicted RBP14.64□□□□□ -0.07
LIG1-219ENST00000600055 TMEM126BQ8IUX1 230 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 IFT20Q8IY31 132 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 LRRC56Q8IYG6 542 aaPredicted RBP14.64□□□□□ -0.07
LIG1-219ENST00000600055 SYTL1Q8IYJ3 562 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 DNAJC22Q8N4W6 341 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 IL22RA1Q8N6P7 574 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 OR2L3Q8NG85 312 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 MCOLN3Q8TDD5 553 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 SMPDL3AQ92484 453 aa14.64□□□□□ -0.07
LIG1-219ENST00000600055 GPR22Q99680 433 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms