RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PPP1R3AQ16821 1122 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 MROH9Q5TGP6 573 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 PRAMEF17Q5VTA0 474 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 FCRL6Q6DN72 434 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 SBSNQ6UWP8 590 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 CDHR3Q6ZTQ4 885 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 TIPARPQ7Z3E1 657 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 KMT5CQ86Y97 462 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 EIF1ADQ8N9N8 165 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 SNIP1Q8TAD8 396 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 MAGEC3Q8TD91 643 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 DCAKDQ8WVC6 231 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 ZNF501Q96CX3 271 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 NAF1Q96HR8 494 aaKnown RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 MIPEPQ99797 713 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 PARVBQ9HBI1 364 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 POPDC3Q9HBV1 291 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 GPAMQ9HCL2 828 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 THSD1Q9NS62 852 aa13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 STOX2Q9P2F5 926 aaPredicted RBP13.7□□□□□ -0.22
SHKBP1-217ENST00000598558 IGKV1-8A0A0C4DH67 115 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 A0A0J9YY10 115 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 TEX51A0A1B0GUA7 166 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 TMEM8BA6NDV4 472 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 SRRM3A6NNA2 597 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 POC1B-GALNT4F8VUJ3 575 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 POLR1CO15160 346 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC16A5O15375 505 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 C8GP07360 202 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC35E2BP0CK96 405 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 CCDC166P0CW27 439 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 FGF5P12034 268 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 MAGP20916 626 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 OAS2P29728 719 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 EIF2S3P41091 472 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 MLLT3P42568 568 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 RAB10P61026 200 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 SRSF6Q13247 344 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 TSNQ15631 228 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 UAP1Q16222 522 aaPredicted RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 ERCC6LQ2NKX8 1250 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 TRMT10CQ7L0Y3 403 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 CARFQ8N187 725 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 DNAJC22Q8N4W6 341 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 NKAPQ8N5F7 415 aaKnown RBP13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 MCOLN3Q8TDD5 553 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 UBXN10Q96LJ8 280 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 PAFAH2Q99487 392 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 DHRS4Q9BTZ2 278 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 DDA1Q9BW61 102 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 ACAT2Q9BWD1 397 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 SYNPO2LQ9H987 977 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 SYTL2Q9HCH5 934 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 FGF21Q9NSA1 209 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 LNPEPQ9UIQ6 1025 aa13.69□□□□□ -0.22
SHKBP1-217ENST00000598558 ACACBO00763 2458 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 A0A087WUV0 522 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 H3BMH7 237 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 KDM1AO60341 852 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ALDOAP04075 364 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ABHD2P08910 425 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 STMN1P16949 149 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 MAP4P27816 1152 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ITPKBP27987 946 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 GRIA3P42263 894 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC12A2P55011 1212 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 IRF9Q00978 393 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SP140Q13342 867 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 TUBB3Q13509 450 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ARHGAP19Q14CB8 494 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 OR4D1Q15615 310 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SF1Q15637 639 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ST3GAL2Q16842 350 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 DEFB110Q30KQ9 67 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 C18orf21Q32NC0 220 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 DCAF12Q5T6F0 453 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 LRRC8EQ6NSJ5 796 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 PWWP2BQ6NUJ5 590 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 FIGLAQ6QHK4 219 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 AGTRAPQ6RW13 159 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 DTX1Q86Y01 620 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 C19orf47Q8N9M1 422 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 OR2L3Q8NG85 312 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 OR1L3Q8NH93 324 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SMPDL3AQ92484 453 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 PTERQ96BW5 349 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 CCDC138Q96M89 665 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 RAB11FIP5Q9BXF6 653 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 B3GNT4Q9C0J1 378 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 DERL2Q9GZP9 239 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ATG10Q9H0Y0 220 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 AKIRIN1Q9H9L7 192 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SLC6A20Q9NP91 592 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 IGSF5Q9NSI5 407 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SOHLH2Q9NX45 425 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 UTP6Q9NYH9 597 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 ACSL6Q9UKU0 697 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 SH2B3Q9UQQ2 575 aa13.68□□□□□ -0.22
SHKBP1-217ENST00000598558 EFSO43281 561 aa13.67□□□□□ -0.22
SHKBP1-217ENST00000598558 CTSVO60911 334 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms