RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 STX2P32856 288 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 IL2P60568 153 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 ILF2Q12905 390 aaKnown RBP14.04□□□□□ -0.16
VRK3-206ENST00000594090 SP140Q13342 867 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 MAP7Q14244 749 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 FASTKQ14296 549 aaKnown RBP14.04□□□□□ -0.16
VRK3-206ENST00000594090 ARHGAP19Q14CB8 494 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 KBTBD12Q3ZCT8 623 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 MANEAQ5SRI9 462 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 PWWP2BQ6NUJ5 590 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 CDHR3Q6ZTQ4 885 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 VASH2Q86V25 355 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 CACNA2D3Q8IZS8 1091 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 NLGN4XQ8N0W4 816 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 MYO1HQ8N1T3 1032 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 IL22RA1Q8N6P7 574 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 NLGN4YQ8NFZ3 816 aaPredicted RBP14.04□□□□□ -0.16
VRK3-206ENST00000594090 OR8K5Q8NH50 307 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 FBF1Q8TES7 1133 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 DLG3Q92796 817 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 TCTN2Q96GX1 697 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 FMO2Q99518 471 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 CHRNA10Q9GZZ6 450 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 CPNE5Q9HCH3 593 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 FAM60AQ9NP50 221 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 TXNDC16Q9P2K2 825 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 ADAMTS6Q9UKP5 1117 aa14.04□□□□□ -0.16
VRK3-206ENST00000594090 TMEM150CB9EJG8 249 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 FKBP9O95302 570 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 SYF2O95926 243 aaKnown RBP14.03□□□□□ -0.16
VRK3-206ENST00000594090 C8GP07360 202 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 ZNF37AP17032 561 aaPredicted RBP14.03□□□□□ -0.16
VRK3-206ENST00000594090 SAT1P21673 171 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 GP5P40197 560 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 PNLIPRP1P54315 467 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 TAS2R39P59534 338 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 CXADRP78310 365 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 SF1Q15637 639 aaKnown RBP14.03□□□□□ -0.16
VRK3-206ENST00000594090 DEFB110Q30KQ9 67 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 CEP128Q6ZU80 1094 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 CTAGE3PQ8IX95 158 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 IFT81Q8WYA0 676 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 RBBP8Q99708 897 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 PRORYQ9H606 182 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 INTS7Q9NVH2 962 aaKnown RBP14.03□□□□□ -0.16
VRK3-206ENST00000594090 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.03□□□□□ -0.16
VRK3-206ENST00000594090 LHX6Q9UPM6 363 aa14.03□□□□□ -0.16
VRK3-206ENST00000594090 ZNF839A8K0R7 811 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 SLC16A5O15375 505 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 EFSO43281 561 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 SCRG1O75711 98 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 CYP2A7P20853 494 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 HSD17B2P37059 387 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 GABRA4P48169 554 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 ABHD18Q0P651 414 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 ZNF460Q14592 562 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 EFTUD2Q15029 972 aaKnown RBP eCLIP14.02□□□□□ -0.163e-6■■□□□ 13.2
VRK3-206ENST00000594090 KIAA1614Q5VZ46 1190 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 SUSD1Q6UWL2 747 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 C6orf15Q6UXA7 325 aaPredicted RBP14.02□□□□□ -0.16
VRK3-206ENST00000594090 RELL1Q8IUW5 271 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 TMEM126BQ8IUX1 230 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 ESX1Q8N693 406 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 PPM1NQ8N819 430 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 GALNT6Q8NCL4 622 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 PPFIBP2Q8ND30 876 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 LRRN4CLQ8ND94 238 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 OR2L3Q8NG85 312 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 OR2A1Q8NGT9 310 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 OR1L3Q8NH93 324 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 ZNF480Q8WV37 535 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 SMPDL3AQ92484 453 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 GPR22Q99680 433 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 SLC12A9Q9BXP2 914 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 NINJ2Q9NZG7 142 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 PDE10AQ9Y233 779 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 KLHL20Q9Y2M5 609 aa14.02□□□□□ -0.16
VRK3-206ENST00000594090 ANKRD11Q6UB99 2663 aaPredicted RBP14.02□□□□□ -0.17
VRK3-206ENST00000594090 HCRTR1O43613 425 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 CPNE3O75131 537 aaKnown RBP14.01□□□□□ -0.17
VRK3-206ENST00000594090 NTRK1P04629 796 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 LIFP15018 202 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 IMPA1P29218 277 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 STAT5AP42229 794 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 ITGA1P56199 1179 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 POU4F1Q01851 419 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 VAC14Q08AM6 782 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 NAB1Q13506 487 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 PRAMEF17Q5VTA0 474 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 FIGLAQ6QHK4 219 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 TMEM207Q6UWW9 146 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 CCDC81Q6ZN84 652 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 CEP97Q8IW35 865 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 SYTL1Q8IYJ3 562 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 MCOLN3Q8TDD5 553 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 SNRNP27Q8WVK2 155 aaKnown RBP14.01□□□□□ -0.17
VRK3-206ENST00000594090 N4BP2L2Q92802 583 aaPredicted RBP14.01□□□□□ -0.17
VRK3-206ENST00000594090 PDLIM5Q96HC4 596 aaKnown RBP14.01□□□□□ -0.17
VRK3-206ENST00000594090 MIPEPQ99797 713 aa14.01□□□□□ -0.17
VRK3-206ENST00000594090 TSPYL1Q9H0U9 437 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms