RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 KALRNO60229 2985 aa23.01■■□□□ 1.27
SHMT1-206ENST00000579558 GCN1Q92616 2671 aaKnown RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 PIEZO2Q9H5I5 2752 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 PRICKLE3O43900 615 aaPredicted RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 VPS26AO75436 327 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 PSIP1O75475 530 aaKnown RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 HBQ1P09105 142 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 PTPN4P29074 926 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 ETF1P62495 437 aaKnown RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 EEF1AKMT2Q5JPI9 291 aaKnown RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 SYT10Q6XYQ8 523 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 ZNF517Q6ZMY9 492 aaPredicted RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 SPNS2Q8IVW8 549 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 SYTL1Q8IYJ3 562 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 OR9A1PQ8NGU1 263 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 HMGCLL1Q8TB92 370 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 CD200R1Q8TD46 325 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 INPP5DQ92835 1189 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 LRRC39Q96DD0 335 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 SPRTNQ9H040 489 aaPredicted RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 PPANQ9NQ55 473 aaKnown RBP23■■□□□ 1.27
SHMT1-206ENST00000579558 IRAK4Q9NWZ3 460 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 PLCL2Q9UPR0 1127 aa23■■□□□ 1.27
SHMT1-206ENST00000579558 CDC14CA4D256 554 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 FKBP9O95302 570 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 MPC1LP0DKB6 136 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 SFTPCP11686 197 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 ENO3P13929 434 aaPredicted RBP22.99■■□□□ 1.27
SHMT1-206ENST00000579558 PSMB5P28074 263 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 CARSP49589 748 aaKnown RBP22.99■■□□□ 1.27
SHMT1-206ENST00000579558 POLE2P56282 527 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 RPS18P62269 152 aaKnown RBP22.99■■□□□ 1.27
SHMT1-206ENST00000579558 MRPS25P82663 173 aaKnown RBP22.99■■□□□ 1.27
SHMT1-206ENST00000579558 CYP2A13Q16696 494 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 PTCHD3Q3KNS1 767 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 LCN10Q6JVE6 187 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 FIGLAQ6QHK4 219 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 CNTN4Q8IWV2 1026 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 SPATA4Q8NEY3 305 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 NDNQ99608 321 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 WDR83Q9BRX9 315 aaKnown RBP22.99■■□□□ 1.27
SHMT1-206ENST00000579558 PLAC1Q9HBJ0 212 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 FARSAQ9Y285 508 aaKnown RBP22.99■■□□□ 1.27
SHMT1-206ENST00000579558 SNX24Q9Y343 169 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 TEX264Q9Y6I9 313 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 AP1M2Q9Y6Q5 423 aa22.99■■□□□ 1.27
SHMT1-206ENST00000579558 H3BMH7 237 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 MYO1CO00159 1063 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 NDC80O14777 642 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 FURINP09958 794 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 CBSLP0DN79 551 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 CBSP35520 551 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 RPL21P46778 160 aaKnown RBP22.98■■□□□ 1.27
SHMT1-206ENST00000579558 KIAA0408Q6ZU52 694 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 CPNE9Q8IYJ1 553 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 APOBEC4Q8WW27 367 aaKnown RBP22.98■■□□□ 1.27
SHMT1-206ENST00000579558 MIPEPQ99797 713 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 ADNPQ9H2P0 1102 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 GEMIN8Q9NWZ8 242 aaKnown RBP22.98■■□□□ 1.27
SHMT1-206ENST00000579558 EURLQ9NYK6 297 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 SLC17A6Q9P2U8 582 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 TRMT6Q9UJA5 497 aaKnown RBP22.98■■□□□ 1.27
SHMT1-206ENST00000579558 POLHQ9Y253 713 aa22.98■■□□□ 1.27
SHMT1-206ENST00000579558 A0A1W2PPV9 198 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 FAM187AA6NFU0 413 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 TP73O15350 636 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 ZSCAN9O15535 394 aaPredicted RBP22.97■■□□□ 1.27
SHMT1-206ENST00000579558 RECKO95980 971 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 CTSBP07858 339 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 GABRB3P28472 473 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 C2orf54Q08AI8 447 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 FASTKQ14296 549 aaKnown RBP22.97■■□□□ 1.27
SHMT1-206ENST00000579558 STEAP4Q687X5 459 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 FCRL6Q6DN72 434 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 UGT3A1Q6NUS8 523 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 TLDC1Q6P9B6 456 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 SYVN1Q86TM6 617 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 ANKMY2Q8IV38 441 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 MCATQ8IVS2 390 aaKnown RBP22.97■■□□□ 1.27
SHMT1-206ENST00000579558 ZNF655Q8N720 491 aaPredicted RBP22.97■■□□□ 1.27
SHMT1-206ENST00000579558 BBOF1Q8ND07 529 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 SEC14L1Q92503 715 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 PKP4Q99569 1192 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 COL6A6A6NMZ7 2263 aa22.97■■□□□ 1.27
SHMT1-206ENST00000579558 AHSGP02765 367 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 RAB40ALP0C0E4 278 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 ERGP11308 486 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 AGXTP21549 392 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 MCM3P25205 808 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 GRIA3P42263 894 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 PDIA2Q13087 525 aaKnown RBP22.96■■□□□ 1.27
SHMT1-206ENST00000579558 KCNAB2Q13303 367 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 ZC3H12BQ5HYM0 836 aaKnown RBP22.96■■□□□ 1.27
SHMT1-206ENST00000579558 TEDDM1Q5T9Z0 273 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 TRMT10BQ6PF06 316 aaKnown RBP22.96■■□□□ 1.27
SHMT1-206ENST00000579558 PIWIL4Q7Z3Z4 852 aaKnown RBP22.96■■□□□ 1.27
SHMT1-206ENST00000579558 MAATS1Q7Z4T9 603 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 ENDOVQ8N8Q3 282 aaKnown RBP22.96■■□□□ 1.27
SHMT1-206ENST00000579558 OR2L3Q8NG85 312 aa22.96■■□□□ 1.27
SHMT1-206ENST00000579558 OR2A1Q8NGT9 310 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms