RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FASTKQ14296 549 aaKnown RBP15.34■□□□□ 0.05
VPS53-218ENST00000575207 GRM7Q14831 915 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 PDLIM3Q53GG5 364 aaPredicted RBP15.34■□□□□ 0.05
VPS53-218ENST00000575207 CMPK2Q5EBM0 449 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 FCRLBQ6BAA4 426 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 UNC5DQ6UXZ4 953 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 WDR53Q7Z5U6 358 aaPredicted RBP15.34■□□□□ 0.05
VPS53-218ENST00000575207 DTWD1Q8N5C7 304 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 ROBO4Q8WZ75 1007 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 RNF25Q96BH1 459 aaPredicted RBP15.34■□□□□ 0.05
VPS53-218ENST00000575207 FERD3LQ96RJ6 166 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 SH3GL2Q99962 352 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 CCM2Q9BSQ5 444 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 XKR8Q9H6D3 395 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 ZNF304Q9HCX3 659 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 NLRC4Q9NPP4 1024 aa15.34■□□□□ 0.05
VPS53-218ENST00000575207 CWC15Q9P013 229 aaKnown RBP15.34■□□□□ 0.05
VPS53-218ENST00000575207 SNRNP200O75643 2136 aaKnown RBP15.34■□□□□ 0.05
VPS53-218ENST00000575207 BICDL2A1A5D9 508 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 SERINC4A6NH21 518 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 DDX3XO00571 662 aaKnown RBP eCLIP15.33■□□□□ 0.04
VPS53-218ENST00000575207 TFECO14948 347 aaPredicted RBP15.33■□□□□ 0.04
VPS53-218ENST00000575207 NME2P1O60361 137 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 CDC40O60508 579 aaKnown RBP eCLIP15.33■□□□□ 0.04
VPS53-218ENST00000575207 NME2P22392 152 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 ACVR2AP27037 513 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 PPP1R2P41236 205 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 ZNF135P52742 658 aaPredicted RBP15.33■□□□□ 0.04
VPS53-218ENST00000575207 MAPKAPK3Q16644 382 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 MEP1AQ16819 746 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 FAM214AQ32MH5 1076 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 GXYLT1Q4G148 440 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 LDLRAP1Q5SW96 308 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 ERMARDQ5T6L9 678 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 KIAA0930Q6ICG6 404 aaPredicted RBP15.33■□□□□ 0.04
VPS53-218ENST00000575207 LGI4Q8N135 537 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 DDHD1Q8NEL9 900 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 DTX3LQ8TDB6 740 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 ZNF653Q96CK0 615 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 RBM41Q96IZ5 413 aaKnown RBP15.33■□□□□ 0.04
VPS53-218ENST00000575207 SNRNP25Q9BV90 132 aaKnown RBP15.33■□□□□ 0.04
VPS53-218ENST00000575207 THAP2Q9H0W7 228 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 VPS16Q9H269 839 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 MAGEE1Q9HCI5 957 aa15.33■□□□□ 0.04
VPS53-218ENST00000575207 FITM1A5D6W6 292 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 SMC2O95347 1197 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 ZSCAN22P10073 491 aaPredicted RBP15.32■□□□□ 0.04
VPS53-218ENST00000575207 DESP17661 470 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 MCM3P25205 808 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 ADH7P40394 386 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 ST13P50502 369 aaKnown RBP15.32■□□□□ 0.04
VPS53-218ENST00000575207 NIPAL4Q0D2K0 466 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 FBXL19-AS1Q494R0 122 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 FNBP1LQ5T0N5 605 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 TMEM205Q6UW68 189 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 B3GNT6Q6ZMB0 384 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 ARHGEF18Q6ZSZ5 1173 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 SLC13A5Q86YT5 568 aaPredicted RBP15.32■□□□□ 0.04
VPS53-218ENST00000575207 CRLF3Q8IUI8 442 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 NELFBQ8WX92 580 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 RNASE6Q93091 150 aaKnown RBP15.32■□□□□ 0.04
VPS53-218ENST00000575207 ZNF285Q96NJ3 590 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 MCEEQ96PE7 176 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 NPAS2Q99743 824 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 ADGRE3Q9BY15 652 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 GOLPH3LQ9H4A5 285 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 CLSTN2Q9H4D0 955 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 SPHK1Q9NYA1 384 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 B4GALT7Q9UBV7 327 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 TTLL3Q9Y4R7 772 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 FAM215AQ9Y5M1 114 aa15.32■□□□□ 0.04
VPS53-218ENST00000575207 TCRBV5S1A1TA0A578 114 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 TUBAL3A6NHL2 446 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 CES2O00748 559 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 CDK2AP1O14519 115 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 HS6ST1O60243 411 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 POLBP06746 335 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 RPL7AP62424 266 aaKnown RBP15.31■□□□□ 0.04
VPS53-218ENST00000575207 LONRF2Q1L5Z9 754 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 C8orf34Q49A92 452 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 TCTE1Q5JU00 501 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 PRMT9Q6P2P2 845 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 TMCO3Q6UWJ1 677 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 ZNF677Q86XU0 584 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 C16orf52Q8NHV5 167 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 SMARCE1Q969G3 411 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 PERPQ96FX8 193 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 LINC00615Q96LM1 132 aaPredicted RBP15.31■□□□□ 0.04
VPS53-218ENST00000575207 MVB12BQ9H7P6 319 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 ETNK2Q9NVF9 386 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 ADAM22Q9P0K1 906 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 FAM8A1Q9UBU6 413 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 AMACRQ9UHK6 382 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 ZNF711Q9Y462 761 aa15.31■□□□□ 0.04
VPS53-218ENST00000575207 SLC25A12O75746 678 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 NID1P14543 1247 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 CD86P42081 329 aa15.3■□□□□ 0.04
VPS53-218ENST00000575207 OC90Q02509 493 aaPredicted RBP15.3■□□□□ 0.04
VPS53-218ENST00000575207 C10orf62Q5T681 223 aaPredicted RBP15.3■□□□□ 0.04
VPS53-218ENST00000575207 PLAG1Q6DJT9 500 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms