RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ETNK1Q9HBU6 452 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 AGPAT4Q9NRZ5 378 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 CUTCQ9NTM9 273 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 INTS7Q9NVH2 962 aaKnown RBP20.21■□□□□ 0.83
VPS53-216ENST00000574029 CAMSAP3Q9P1Y5 1249 aaPredicted RBP20.21■□□□□ 0.83
VPS53-216ENST00000574029 CIDEBQ9UHD4 219 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 CDC23Q9UJX2 597 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 CSAG2Q9Y5P2 127 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 DOCK10Q96BY6 2186 aa20.21■□□□□ 0.83
VPS53-216ENST00000574029 PRRC2CQ9Y520 2896 aaKnown RBP20.2■□□□□ 0.83
VPS53-216ENST00000574029 PRICKLE3O43900 615 aaPredicted RBP20.2■□□□□ 0.82
VPS53-216ENST00000574029 SLCO2B1O94956 709 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 STIP1P31948 543 aaKnown RBP20.2■□□□□ 0.82
VPS53-216ENST00000574029 GRIA1P42261 906 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 FASTKD1Q53R41 847 aaKnown RBP20.2■□□□□ 0.82
VPS53-216ENST00000574029 TCTE1Q5JU00 501 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 KIRREL2Q6UWL6 708 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 SYCE1Q8N0S2 351 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 ST6GALNAC3Q8NDV1 305 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 CFAP61Q8NHU2 1237 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.2■□□□□ 0.82
VPS53-216ENST00000574029 IL17FQ96PD4 163 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 MRM3Q9HC36 420 aaKnown RBP20.2■□□□□ 0.82
VPS53-216ENST00000574029 NOVA2Q9UNW9 492 aaKnown RBP20.2■□□□□ 0.82
VPS53-216ENST00000574029 HS3ST3B1Q9Y662 390 aa20.2■□□□□ 0.82
VPS53-216ENST00000574029 DOPEY1Q5JWR5 2465 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 FITM1A5D6W6 292 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 IQCF5A8MTL0 148 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 RASGRF2O14827 1237 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 ALOX12BO75342 701 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 APOA4P06727 396 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 MCM3P25205 808 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 AOAHP28039 575 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 PPARGP37231 505 aaPredicted RBP20.19■□□□□ 0.82
VPS53-216ENST00000574029 FDFT1P37268 417 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 GRIA3P42263 894 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 GRM7Q14831 915 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 SF1Q15637 639 aaKnown RBP20.19■□□□□ 0.82
VPS53-216ENST00000574029 HIF1AQ16665 826 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 AGAP7PQ5VUJ5 663 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 FIGLAQ6QHK4 219 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 PPP1R21Q6ZMI0 780 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 NLRP9Q7RTR0 991 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 TAX1BP1Q86VP1 789 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 KCNMB4Q86W47 210 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 OR6P1Q8NGX9 317 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 COG1Q8WTW3 980 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 ATG4AQ8WYN0 398 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 PEX13Q92968 403 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 AGAP4Q96P64 663 aa20.19■□□□□ 0.82
VPS53-216ENST00000574029 NXT1Q9UKK6 140 aaKnown RBP20.19■□□□□ 0.82
VPS53-216ENST00000574029 FKBP9O95302 570 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 FTCDO95954 541 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 OASLQ15646 514 aaKnown RBP20.18■□□□□ 0.82
VPS53-216ENST00000574029 KIAA1328Q86T90 577 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 KRT222Q8N1A0 295 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 TTC29Q8NA56 475 aaPredicted RBP20.18■□□□□ 0.82
VPS53-216ENST00000574029 ZUFSPQ96AP4 578 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 HES6Q96HZ4 224 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 IL1RAPL1Q9NZN1 696 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 SLC39A10Q9ULF5 831 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 TCAF1Q9Y4C2 921 aa20.18■□□□□ 0.82
VPS53-216ENST00000574029 VSTM2BA6NLU5 285 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 TARM1B6A8C7 271 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 TSFMP43897 325 aaKnown RBP20.17■□□□□ 0.82
VPS53-216ENST00000574029 PRAMEP78395 509 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 FAM214AQ32MH5 1076 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 TUBB8Q3ZCM7 444 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 AARS2Q5JTZ9 985 aaKnown RBP20.17■□□□□ 0.82
VPS53-216ENST00000574029 IRAK1BP1Q5VVH5 260 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 SHISA6Q6ZSJ9 500 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 LDB1Q86U70 411 aaPredicted RBP20.17■□□□□ 0.82
VPS53-216ENST00000574029 DNAJB14Q8TBM8 379 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 SELENOSQ9BQE4 189 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 RAB11FIP5Q9BXF6 653 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 LHPPQ9H008 270 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 SOX17Q9H6I2 414 aaPredicted RBP20.17■□□□□ 0.82
VPS53-216ENST00000574029 SEMA3GQ9NS98 782 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 CTSFQ9UBX1 484 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 KLK4Q9Y5K2 254 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 CACNA1DQ01668 2161 aa20.17■□□□□ 0.82
VPS53-216ENST00000574029 E7EVH7 732 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 E2F3O00716 465 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 PRMT5O14744 637 aaPredicted RBP20.16■□□□□ 0.82
VPS53-216ENST00000574029 LIASO43766 372 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 SRPX2O60687 465 aaPredicted RBP20.16■□□□□ 0.82
VPS53-216ENST00000574029 CTSVO60911 334 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 OR1D4P47884 311 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 TMED2Q15363 201 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 PARP9Q8IXQ6 854 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 OR11G2Q8NGC1 345 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 HMGCLL1Q8TB92 370 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 RAD51AP1Q96B01 352 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 VPS50Q96JG6 964 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 FRMD8P1Q9BZ68 369 aaPredicted RBP20.16■□□□□ 0.82
VPS53-216ENST00000574029 CATSPERZQ9NTU4 200 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 ANAPC5Q9UJX4 755 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 NOTCH2Q04721 2471 aa20.16■□□□□ 0.82
VPS53-216ENST00000574029 A0A0U1RQJ8 604 aa20.15■□□□□ 0.82
VPS53-216ENST00000574029 TTPAP49638 278 aa20.15■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms