RNA–Protein interactions for RNA: ENST00000571249.1

CHD3-213, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-213ENST00000571249 PAPOLAP51003 745 aaKnown RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 STC1P52823 247 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 TRAF2Q12933 501 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 TNK1Q13470 666 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 GALNT3Q14435 633 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 RPE65Q16518 533 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 FLYWCH1Q4VC44 716 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 MIDNQ504T8 468 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 RNFT1Q5M7Z0 435 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 CATSPEREQ5SY80 951 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 ATG9BQ674R7 924 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 RHBDD2Q6NTF9 364 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 C12orf54Q6X4T0 127 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 ADGRG6Q86SQ4 1221 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 LRRTM4Q86VH4 590 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 CCDC170Q8IYT3 715 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 LGI4Q8N135 537 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 PLD6Q8N2A8 252 aaKnown RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 PYROXD2Q8N2H3 581 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 CCDC185Q8N715 623 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 MCUQ8NE86 351 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 PROKR1Q8TCW9 393 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 KCTD12Q96CX2 325 aaKnown RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 CELF6Q96J87 481 aaKnown RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 VPS50Q96JG6 964 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 WDR24Q96S15 920 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 TIMM29Q9BSF4 260 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 KLHL25Q9H0H3 589 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 SOX17Q9H6I2 414 aaPredicted RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 LRRC19Q9H756 370 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 CATSPERBQ9H7T0 1116 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 SP110Q9HB58 689 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 MRM3Q9HC36 420 aaKnown RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 TXLNGQ9NUQ3 528 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 MYO1AQ9UBC5 1043 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 MYO6Q9UM54 1294 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 EPN1Q9Y6I3 576 aaPredicted RBP6.6□□□□□ -1.35
CHD3-213ENST00000571249 AP1M2Q9Y6Q5 423 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 ROS1P08922 2347 aa6.6□□□□□ -1.35
CHD3-213ENST00000571249 UQCRHLA0A096LP55 91 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 EIF3CLB5ME19 914 aaKnown RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 GOLGA8SH3BPF8 625 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 CHUKO15111 745 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PMM2O15305 246 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 VEGFDO43915 354 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 WFS1O76024 890 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PGLSO95336 258 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 SCGB1D2O95969 90 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 CTSBP07858 339 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PRR35P0CG20 571 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 UQCRC1P31930 480 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PTGER1P34995 402 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 SOX18P35713 384 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 USP8P40818 1118 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 RNF144AP50876 292 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 RENBPP51606 427 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PRKAA1Q13131 559 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PDCD2Q16342 344 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 CDO1Q16878 200 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 C15orf59Q2T9L4 293 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 CCDC40Q4G0X9 1142 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 RPS26P11Q5JNZ5 115 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 ARMC12Q5T9G4 340 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 KAZNQ674X7 775 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 TIGD7Q6NT04 549 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 CDHR3Q6ZTQ4 885 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 MCATQ8IVS2 390 aaKnown RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 ZNF655Q8N720 491 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 SGMS2Q8NHU3 365 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 FAM222BQ8WU58 562 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 SLC20A1Q8WUM9 679 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 PIH1D2Q8WWB5 315 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 N4BP2L2Q92802 583 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 EIF3CQ99613 913 aaKnown RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 CHP1Q99653 195 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 SLC39A8Q9C0K1 460 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 ZNF700Q9H0M5 742 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 FAM83DQ9H4H8 585 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 NOD2Q9HC29 1040 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 TRIM39Q9HCM9 518 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 UBE2TQ9NPD8 197 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 KLHL1Q9NR64 748 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 DTLQ9NZJ0 730 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 ARMCX3Q9UH62 379 aaPredicted RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 POMT2Q9UKY4 750 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 REXO2Q9Y3B8 237 aaKnown RBP6.59□□□□□ -1.35
CHD3-213ENST00000571249 PPIL1Q9Y3C6 166 aa6.59□□□□□ -1.35
CHD3-213ENST00000571249 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.59□□□□□ -1.35
CHD3-213ENST00000571249 CMYA5Q8N3K9 4069 aa6.59□□□□□ -1.36
CHD3-213ENST00000571249 A0A1B0GTH9 108 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 CCDC189A1A4V9 331 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 ASPDHA6ND91 283 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 A8MV72 311 aaPredicted RBP6.58□□□□□ -1.36
CHD3-213ENST00000571249 B2RBV5 119 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 H3BMH7 237 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 HCRTR1O43613 425 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 TLX2O43763 284 aaPredicted RBP6.58□□□□□ -1.36
CHD3-213ENST00000571249 MTX2O75431 263 aa6.58□□□□□ -1.36
CHD3-213ENST00000571249 SLC25A14O95258 325 aaPredicted RBP6.58□□□□□ -1.36
CHD3-213ENST00000571249 BMP10O95393 424 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms