RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 C20orf96Q9NUD7 363 aaPredicted RBP19.94■□□□□ 0.78
CLN3-219ENST00000565778 IFT80Q9P2H3 777 aaPredicted RBP19.94■□□□□ 0.78
CLN3-219ENST00000565778 SRPK3Q9UPE1 567 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 PADI2Q9Y2J8 665 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 SPTBP11277 2137 aa19.94■□□□□ 0.78
CLN3-219ENST00000565778 CES2O00748 559 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 MATN4O95460 622 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 CASRP41180 1078 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 PTGIRP43119 386 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 KLRB1Q12918 225 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 ACSBG2Q5FVE4 666 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 COLEC12Q5KU26 742 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 ZNF385CQ66K41 422 aaPredicted RBP19.93■□□□□ 0.78
CLN3-219ENST00000565778 CPZQ66K79 652 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 FCRL6Q6DN72 434 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 DENND6AQ8IWF6 608 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 ANP32BQ92688 251 aaKnown RBP19.93■□□□□ 0.78
CLN3-219ENST00000565778 ZUFSPQ96AP4 578 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 SIGLEC10Q96LC7 697 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 MIPEPQ99797 713 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 DHRS4Q9BTZ2 278 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 CCDC68Q9H2F9 335 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 KCNF1Q9H3M0 494 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 FBXO6Q9NRD1 293 aaPredicted RBP19.93■□□□□ 0.78
CLN3-219ENST00000565778 NDOR1Q9UHB4 597 aa19.93■□□□□ 0.78
CLN3-219ENST00000565778 ZCWPW2A0A1B0GU75 182 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 KRT87PA6NCN2 255 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 PRICKLE3O43900 615 aaPredicted RBP19.92■□□□□ 0.78
CLN3-219ENST00000565778 USP1O94782 785 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 CD63P08962 238 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 ATP5DP30049 168 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 LONRF1Q17RB8 773 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 KLHL38Q2WGJ6 581 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 PROKR1Q8TCW9 393 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 CALML6Q8TD86 181 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 ADAMTS17Q8TE56 1095 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 GBP5Q96PP8 586 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 SLC25A23Q9BV35 468 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 EPN3Q9H201 632 aa19.92■□□□□ 0.78
CLN3-219ENST00000565778 TLN1Q9Y490 2541 aaKnown RBP19.91■□□□□ 0.78
CLN3-219ENST00000565778 TARM1B6A8C7 271 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 FKBP9O95302 570 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 F7P08709 466 aaPredicted RBP19.91■□□□□ 0.78
CLN3-219ENST00000565778 TCP1P17987 556 aaKnown RBP19.91■□□□□ 0.78
CLN3-219ENST00000565778 OTX2P32243 289 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 ARSFP54793 590 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 GBX1Q14549 363 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 SSPNQ14714 243 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 SLC9A5Q14940 896 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 TTLL9Q3SXZ7 439 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 NKAIN1Q4KMZ8 207 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 TTLL10Q6ZVT0 673 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 OR9A1PQ8NGU1 263 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 HMGCLL1Q8TB92 370 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 DENND1AQ8TEH3 1009 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 DLG3Q92796 817 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 DDX47Q9H0S4 455 aaKnown RBP19.91■□□□□ 0.78
CLN3-219ENST00000565778 SPATA7Q9P0W8 599 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 ASIC3Q9UHC3 531 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 PTRH2Q9Y3E5 179 aaKnown RBP19.91■□□□□ 0.78
CLN3-219ENST00000565778 FAM169AQ9Y6X4 670 aa19.91■□□□□ 0.78
CLN3-219ENST00000565778 KLF7O75840 302 aaPredicted RBP19.9■□□□□ 0.78
CLN3-219ENST00000565778 PSMB5P28074 263 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 MAGEA3P43357 314 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 CLCN7P51798 805 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 FASTKQ14296 549 aaKnown RBP19.9■□□□□ 0.78
CLN3-219ENST00000565778 RNASEH2BQ5TBB1 312 aaKnown RBP19.9■□□□□ 0.78
CLN3-219ENST00000565778 MED25Q71SY5 747 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 PCGF5Q86SE9 256 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 RAB43Q86YS6 212 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 LMNTD2Q8IXW0 634 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 AGGF1Q8N302 714 aaeCLIP19.9■□□□□ 0.78
CLN3-219ENST00000565778 FAM114A2Q9NRY5 505 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 FBXO5Q9UKT4 447 aa19.9■□□□□ 0.78
CLN3-219ENST00000565778 A6NL46 340 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 HAUS5O94927 633 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 SPTA1P02549 2419 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 CATP04040 527 aaKnown RBP19.89■□□□□ 0.77
CLN3-219ENST00000565778 FOLR3P41439 243 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 SLC1A2P43004 574 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 PGDP52209 483 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 RRADP55042 308 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 TSTA3Q13630 321 aaPredicted RBP19.89■□□□□ 0.77
CLN3-219ENST00000565778 CYP2A13Q16696 494 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 HSP90AA5PQ58FG0 334 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 TCTE1Q5JU00 501 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 ZNF549Q6P9A3 640 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 TMEM102Q8N9M5 508 aaPredicted RBP19.89■□□□□ 0.77
CLN3-219ENST00000565778 SERBP1Q8NC51 408 aaKnown RBP eCLIP19.89■□□□□ 0.77
CLN3-219ENST00000565778 OR2L3Q8NG85 312 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 OR2A1Q8NGT9 310 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 SLC30A3Q99726 388 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 SELENOSQ9BQE4 189 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 ACAT2Q9BWD1 397 aa19.89■□□□□ 0.77
CLN3-219ENST00000565778 IARS2Q9NSE4 1012 aaKnown RBP19.89■□□□□ 0.77
CLN3-219ENST00000565778 A0A1W2PPV9 198 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 ARHGEF33A8MVX0 844 aa19.88■□□□□ 0.77
CLN3-219ENST00000565778 DNALI1O14645 258 aaPredicted RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 SRPX2O60687 465 aaPredicted RBP19.88■□□□□ 0.77
CLN3-219ENST00000565778 PSIP1O75475 530 aaKnown RBP19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms