RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	PRRG4	Q9BZD6	226 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	LAT2	Q9GZY6	243 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	MIS12	Q9H081	205 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	MMP28	Q9H239	520 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	FN3K	Q9H479	309 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	ZWILCH	Q9H900	591 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	XAB2	Q9HCS7	855 aa	Known RBP	4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	ZNF334	Q9HCZ1	680 aa	Predicted RBP	4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	DNAJC4	Q9NNZ3	241 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	WDR83OS	Q9Y284	106 aa		4.09	□□□□□ -1.75
CHD9-215	ENST00000565442	SMCHD1	A6NHR9	2005 aa		4.09	□□□□□ -1.76
CHD9-215	ENST00000565442	IGLV9-49	A0A0B4J1Y8	123 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	LOC101059948	A0A1B0GTJ6	334 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442		A0A1W2PPK0	400 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM172BP	A6NC97	362 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	ANKRD61	A6NGH8	418 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	SLC22A3	O75751	556 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	CAVIN2	O95810	425 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	IGLV2-11	P01706	119 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	GBA	P04062	536 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	LIF	P15018	202 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	ACAT1	P24752	427 aa	Known RBP	4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	HOXC13	P31276	330 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	BMX	P51813	675 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	ODF4	Q2M2E3	257 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	CCDC184	Q52MB2	194 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	ZC2HC1C	Q53FD0	456 aa	Predicted RBP	4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	SPATA21	Q7Z572	469 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	ABI3BP	Q7Z7G0	1075 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	GLRX5	Q86SX6	157 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	ISCA2	Q86U28	154 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	RTN4RL2	Q86UN3	420 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	NUDT13	Q86X67	352 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	MMD2	Q8IY49	270 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	STPG4	Q8N801	248 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	BMPER	Q8N8U9	685 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	GOT1L1	Q8NHS2	421 aa	Predicted RBP	4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	PIGB	Q92521	554 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	TM9SF4	Q92544	642 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	TMEM143	Q96AN5	459 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM20A	Q96MK3	541 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	INTS14	Q96SY0	518 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	CITED2	Q99967	270 aa	Predicted RBP	4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	SDR39U1	Q9NRG7	319 aa	Predicted RBP	4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	GTF3C4	Q9UKN8	822 aa		4.08	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM86B1	E9PN63	330 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	WDR46	O15213	610 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SLC22A2	O15244	555 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	PRKRA	O75569	313 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	GSR	P00390	522 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM86B2	P0C5J1	330 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	PLA2G4B	P0C869	781 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	IRF2	P14316	349 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	PAX1	P15863	534 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	EPCAM	P16422	314 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	TCEA1	P23193	301 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	PSMA3	P25788	255 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	GSDMD	P57764	484 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	PHEX	P78562	749 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	BFSP1	Q12934	665 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	TAF10	Q12962	218 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	MPP7	Q5T2T1	576 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	CYP4A22	Q5TCH4	519 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SFMBT2	Q5VUG0	894 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	ENPP7	Q6UWV6	458 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	RBMS3	Q6XE24	437 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	MFSD6	Q6ZSS7	791 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	TRMT1L	Q7Z2T5	733 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SPATA19	Q7Z5L4	167 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	TRPT1	Q86TN4	253 aa	Known RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	LGI2	Q8N0V4	545 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	KBTBD8	Q8NFY9	601 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	OR4K1	Q8NGD4	311 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	KCNE4	Q8WWG9	221 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	NSMAF	Q92636	917 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	PROX1	Q92786	737 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	EXOC4	Q96A65	974 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM71F1	Q96KD3	344 aa	Predicted RBP	4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SPATA33	Q96N06	139 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	FNBP1	Q96RU3	617 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SDF2L1	Q9HCN8	221 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SPHK1	Q9NYA1	384 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	TXNDC16	Q9P2K2	825 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442	SNX7	Q9UNH6	387 aa		4.07	□□□□□ -1.76
CHD9-215	ENST00000565442		A0A087WV48	116 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442		A0A1W2PN81	502 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	HTR3E	A5X5Y0	456 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	MOCS3	O95396	460 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	PRSS1	P07477	247 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM58BP	P0C7Q3	252 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	FRMD6-AS1	P0C7T7	363 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	EFNA1	P20827	205 aa	Predicted RBP	4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	CDH3	P22223	829 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	CD27	P26842	260 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	CHRNA7	P36544	502 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	DLK1	P80370	383 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	NPTX1	Q15818	432 aa		4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	LACTB2	Q53H82	288 aa	Predicted RBP	4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	LBH	Q53QV2	105 aa	Predicted RBP	4.06	□□□□□ -1.76
CHD9-215	ENST00000565442	FAM91A1	Q658Y4	838 aa		4.06	□□□□□ -1.76

Retrieved 100 of 20,778 RNA–protein pairs in 172.9 ms